kieranrcampbell/r-workshop-march-2019

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kieranrcampbell/r-workshop-march-2019

kieranrcampbell

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R workshop on single cell genomics at BC Cancer March 2019

clonealign

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data

ouija

Descriptive probabilistic marker gene approach to single-cell pseudotime inference

switchde

Inference of switch-like differential expression along single-cell trajectories

curver-python

Curve reconstruction from noisy points (python)

ouijaflow

Probabilistic single-cell pseudotime with Edward+Tensorflow

embeddr

This repository is retired software

phenopath

Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds

pseudogp

Probabilistic pseudotime for single-cell RNA-seq data

gpseudotime

Bayesian Gaussian Process Latent Variable Models for pseudotime inference in single-cell RNA-seq data

mfa

Probabilistic inference of single-cell bifurcations

blog-notebooks

IPython notebooks and R markdowns for blog

Jupyter Notebook

scrnaseq-digestion-paper

BC Cancer single-cell RNA-seq digestion method paper

autosmk

Autogenerate templates for Snakemake rules and R scripts

snvworkflow

mallard

Data Acquisition for the CRIS experiment at ISOLDE

camlab-website

Hugo website for camlab Toronto

stan-workshop

STAN workshop for GMS students

ouija-paper

Reproducible analysis for Ouija paper

pseudogp-paper

Reproducible analysis for "Order under uncertainty: on the robustness of differential expression analysis using probabilistic models for pseudotime inference"

curver

Curve reconstruction from noisy points

bmfa

Modelling bifurcations in genomics data using Bayesian hierarchical mixture of factor analysers