Kieran R Campbell (@kieranrcampbell)
github

kieranrcampbell

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Top repositories

1

clonealign

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
R
32
star
2

ouija

Descriptive probabilistic marker gene approach to single-cell pseudotime inference
R
28
star
3

switchde

Inference of switch-like differential expression along single-cell trajectories
R
19
star
4

curver-python

Curve reconstruction from noisy points (python)
Python
12
star
5

ouijaflow

Probabilistic single-cell pseudotime with Edward+Tensorflow
Python
12
star
6

embeddr

This repository is retired software
R
12
star
7

phenopath

Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
C++
10
star
8

pseudogp

Probabilistic pseudotime for single-cell RNA-seq data
R
10
star
9

gpseudotime

Bayesian Gaussian Process Latent Variable Models for pseudotime inference in single-cell RNA-seq data
Julia
8
star
10

r-workshop-march-2019

R workshop on single cell genomics at BC Cancer March 2019
6
star
11

mfa

Probabilistic inference of single-cell bifurcations
R
5
star
12

blog-notebooks

IPython notebooks and R markdowns for blog
Jupyter Notebook
3
star
13

scrnaseq-digestion-paper

BC Cancer single-cell RNA-seq digestion method paper
R
3
star
14

autosmk

Autogenerate templates for Snakemake rules and R scripts
R
3
star
15

snvworkflow

Python
1
star
16

mallard

Data Acquisition for the CRIS experiment at ISOLDE
Python
1
star
17

camlab-website

Hugo website for camlab Toronto
HTML
1
star
18

stan-workshop

STAN workshop for GMS students
HTML
1
star
19

ouija-paper

Reproducible analysis for Ouija paper
R
1
star
20

pseudogp-paper

Reproducible analysis for "Order under uncertainty: on the robustness of differential expression analysis using probabilistic models for pseudotime inference"
R
1
star
21

curver

Curve reconstruction from noisy points
R
1
star
22

bmfa

Modelling bifurcations in genomics data using Bayesian hierarchical mixture of factor analysers
R
1
star