• Stars
    star
    1
  • Language
    Python
  • Created over 11 years ago
  • Updated over 11 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Data Acquisition for the CRIS experiment at ISOLDE

More Repositories

1

clonealign

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
R
32
star
2

ouija

Descriptive probabilistic marker gene approach to single-cell pseudotime inference
R
28
star
3

switchde

Inference of switch-like differential expression along single-cell trajectories
R
19
star
4

curver-python

Curve reconstruction from noisy points (python)
Python
12
star
5

ouijaflow

Probabilistic single-cell pseudotime with Edward+Tensorflow
Python
12
star
6

embeddr

This repository is retired software
R
12
star
7

phenopath

Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
C++
10
star
8

pseudogp

Probabilistic pseudotime for single-cell RNA-seq data
R
10
star
9

gpseudotime

Bayesian Gaussian Process Latent Variable Models for pseudotime inference in single-cell RNA-seq data
Julia
8
star
10

r-workshop-march-2019

R workshop on single cell genomics at BC Cancer March 2019
6
star
11

mfa

Probabilistic inference of single-cell bifurcations
R
5
star
12

blog-notebooks

IPython notebooks and R markdowns for blog
Jupyter Notebook
3
star
13

scrnaseq-digestion-paper

BC Cancer single-cell RNA-seq digestion method paper
R
3
star
14

autosmk

Autogenerate templates for Snakemake rules and R scripts
R
3
star
15

snvworkflow

Python
1
star
16

camlab-website

Hugo website for camlab Toronto
HTML
1
star
17

stan-workshop

STAN workshop for GMS students
HTML
1
star
18

ouija-paper

Reproducible analysis for Ouija paper
R
1
star
19

pseudogp-paper

Reproducible analysis for "Order under uncertainty: on the robustness of differential expression analysis using probabilistic models for pseudotime inference"
R
1
star
20

curver

Curve reconstruction from noisy points
R
1
star
21

bmfa

Modelling bifurcations in genomics data using Bayesian hierarchical mixture of factor analysers
R
1
star