Discover kieranrcampbell/pseudogp-paper Open Source project

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kieranrcampbell

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Reproducible analysis for "Order under uncertainty: on the robustness of differential expression analysis using probabilistic models for pseudotime inference"

clonealign

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data

ouija

Descriptive probabilistic marker gene approach to single-cell pseudotime inference

switchde

Inference of switch-like differential expression along single-cell trajectories

curver-python

Curve reconstruction from noisy points (python)

Python

ouijaflow

Probabilistic single-cell pseudotime with Edward+Tensorflow

Python

embeddr

This repository is retired software

phenopath

Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds

C++

pseudogp

Probabilistic pseudotime for single-cell RNA-seq data

gpseudotime

Bayesian Gaussian Process Latent Variable Models for pseudotime inference in single-cell RNA-seq data

Julia

r-workshop-march-2019

R workshop on single cell genomics at BC Cancer March 2019

mfa

Probabilistic inference of single-cell bifurcations

blog-notebooks

IPython notebooks and R markdowns for blog

Jupyter Notebook

scrnaseq-digestion-paper

BC Cancer single-cell RNA-seq digestion method paper

autosmk

Autogenerate templates for Snakemake rules and R scripts

snvworkflow

Python

mallard

Data Acquisition for the CRIS experiment at ISOLDE

Python

camlab-website

Hugo website for camlab Toronto

HTML

stan-workshop

STAN workshop for GMS students

HTML

ouija-paper

Reproducible analysis for Ouija paper

curver

Curve reconstruction from noisy points

bmfa

Modelling bifurcations in genomics data using Bayesian hierarchical mixture of factor analysers

kieranrcampbell/pseudogp-paper

kieranrcampbell

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