kieranrcampbell/clonealign kieranrcampbell/clonealign

  • Stars
    star
    32
  • Rank 801,539 (Top 16 %)
  • Language
    R
  • License
    Apache License 2.0
  • Created about 7 years ago
  • Updated almost 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
kieranrcampbell/clonealign
github

kieranrcampbell

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data

More Repositories

1

ouija

Descriptive probabilistic marker gene approach to single-cell pseudotime inference
R
28
star
2

switchde

Inference of switch-like differential expression along single-cell trajectories
R
19
star
3

curver-python

Curve reconstruction from noisy points (python)
Python
12
star
4

ouijaflow

Probabilistic single-cell pseudotime with Edward+Tensorflow
Python
12
star
5

embeddr

This repository is retired software
R
12
star
6

phenopath

Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
C++
10
star
7

pseudogp

Probabilistic pseudotime for single-cell RNA-seq data
R
10
star
8

gpseudotime

Bayesian Gaussian Process Latent Variable Models for pseudotime inference in single-cell RNA-seq data
Julia
8
star
9

r-workshop-march-2019

R workshop on single cell genomics at BC Cancer March 2019
6
star
10

mfa

Probabilistic inference of single-cell bifurcations
R
5
star
11

blog-notebooks

IPython notebooks and R markdowns for blog
Jupyter Notebook
3
star
12

scrnaseq-digestion-paper

BC Cancer single-cell RNA-seq digestion method paper
R
3
star
13

autosmk

Autogenerate templates for Snakemake rules and R scripts
R
3
star
14

snvworkflow

Python
1
star
15

mallard

Data Acquisition for the CRIS experiment at ISOLDE
Python
1
star
16

camlab-website

Hugo website for camlab Toronto
HTML
1
star
17

stan-workshop

STAN workshop for GMS students
HTML
1
star
18

ouija-paper

Reproducible analysis for Ouija paper
R
1
star
19

pseudogp-paper

Reproducible analysis for "Order under uncertainty: on the robustness of differential expression analysis using probabilistic models for pseudotime inference"
R
1
star
20

curver

Curve reconstruction from noisy points
R
1
star
21

bmfa

Modelling bifurcations in genomics data using Bayesian hierarchical mixture of factor analysers
R
1
star