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torchio
Medical imaging toolkit for deep learningawesome-medical-imaging
Awesome list of software that I use to do research in medical imaging.unet
"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.highresnet
PyTorch implementation of HighRes3DNetvesseg
Brain vessel segmentation using 3D convolutional neural networksSlicerPyTorch
This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.staple
Python implementation of the STAPLE segmentation algorithmSlicerTorchIO
3D Slicer module for TorchIO.SlicerParcellation
3D Slicer modules for brain segmentation using deep learning.miccai-educational-challenge-2019
Tutorial about combining PyTorch and NiftyNet for deep learning and medical image computingresector
Algorithm to simulate resection surgery on brain MRI scans. Published in MICCAI 2020, extended in IJCARS.resseg-ijcars
Code, data and model for Pérez-García et al. 2021, "A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections"optimally-oriented-flux
SlicerEPISURG
3D Slicer module to visualize the EPISURG dataset and segment postoperative brain resection cavities using deep learning.gestures-miccai-2021
Code for "Pérez-García et al. 2021, Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures, MICCAI 2021".torchio-notebooks
arduino-claw-crane
Collaboration with artist Estefanía B. Flores for her master's thesis at Goldsmiths, University of London.resseg
RESSEG: automatic segmentation of postoperative brain cavities on 3D MRI using deep learning.ndPytools
Little Python tool to manage Hamamatsu NDPI filesfaces-map
Tool to embed faces in a 2D space using computer vision and machine learningjvol
JPEG compression for 3D volumes.creative-coding
p5.js examplesmiccai-educational-challenge-2020
My submission to the MICCAI Educational Challenge 2020.tf2pt
orientations
List of resources to better understand medical images orientation.arterys-models
vesseg-models
Weights for digital subtraction angiography segmentationurl-pdf-img
pyblock
advent-of-code-2022
My solutions for Advent of Code 2022slicer-blockmatching
3D Slicer module as a GUI for blockmatching, a robust registration tooldocker-dgx-marc
highresnet-models
phd-thesis-template
pytorch-tests
SlicerAnimation
3D Slicer module to animate objects using linear transformsblockmatching-nipype
scutoids
telegram-gpt-bot
Use ChatGPT with your voice (in any language) and Telegram.arduino-acronyms
cast-coursework
Computer-assisted Surgery and Therapy courseworkslicer-niftyreg
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