Fernando Pérez-García (@fepegar)
github

fepegar

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Top repositories

1

torchio

Medical imaging toolkit for deep learning
Python
1,957
star
2

awesome-medical-imaging

Awesome list of software that I use to do research in medical imaging.
202
star
3

unet

"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.
Python
134
star
4

highresnet

PyTorch implementation of HighRes3DNet
Python
48
star
5

vesseg

Brain vessel segmentation using 3D convolutional neural networks
Python
38
star
6

SlicerPyTorch

This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.
Python
30
star
7

staple

Python implementation of the STAPLE segmentation algorithm
Python
21
star
8

SlicerTorchIO

3D Slicer module for TorchIO.
Python
20
star
9

SlicerParcellation

3D Slicer modules for brain segmentation using deep learning.
Python
20
star
10

miccai-educational-challenge-2019

Tutorial about combining PyTorch and NiftyNet for deep learning and medical image computing
Jupyter Notebook
14
star
11

resector

Algorithm to simulate resection surgery on brain MRI scans. Published in MICCAI 2020, extended in IJCARS.
Python
13
star
12

resseg-ijcars

Code, data and model for Pérez-García et al. 2021, "A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections"
Python
13
star
13

optimally-oriented-flux

Python
12
star
14

SlicerEPISURG

3D Slicer module to visualize the EPISURG dataset and segment postoperative brain resection cavities using deep learning.
Python
8
star
15

spotify-bpm-splitter

App to split a Spotify list in children playlists sorted by tempo
Python
7
star
16

gestures-miccai-2021

Code for "Pérez-García et al. 2021, Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures, MICCAI 2021".
Python
6
star
17

torchio-notebooks

Jupyter Notebook
6
star
18

arduino-claw-crane

Collaboration with artist Estefanía B. Flores for her master's thesis at Goldsmiths, University of London.
C++
6
star
19

resseg

RESSEG: automatic segmentation of postoperative brain cavities on 3D MRI using deep learning.
Jupyter Notebook
5
star
20

ndPytools

Little Python tool to manage Hamamatsu NDPI files
Python
5
star
21

faces-map

Tool to embed faces in a 2D space using computer vision and machine learning
Python
4
star
22

jvol

JPEG compression for 3D volumes.
Python
4
star
23

creative-coding

p5.js examples
JavaScript
3
star
24

miccai-educational-challenge-2020

My submission to the MICCAI Educational Challenge 2020.
Jupyter Notebook
3
star
25

tf2pt

Jupyter Notebook
2
star
26

orientations

List of resources to better understand medical images orientation.
2
star
27

arterys-models

Python
2
star
28

vesseg-models

Weights for digital subtraction angiography segmentation
2
star
29

url-pdf-img

Python
1
star
30

pyblock

Python
1
star
31

advent-of-code-2022

My solutions for Advent of Code 2022
Python
1
star
32

slicer-blockmatching

3D Slicer module as a GUI for blockmatching, a robust registration tool
Python
1
star
33

docker-dgx-marc

Dockerfile
1
star
34

highresnet-models

1
star
35

phd-thesis-template

TeX
1
star
36

pytorch-tests

Python
1
star
37

SlicerAnimation

3D Slicer module to animate objects using linear transforms
Python
1
star
38

blockmatching-nipype

Python
1
star
39

scutoids

Python
1
star
40

telegram-gpt-bot

Use ChatGPT with your voice (in any language) and Telegram.
Python
1
star
41

arduino-acronyms

1
star
42

cast-coursework

Computer-assisted Surgery and Therapy coursework
TeX
1
star
43

slicer-niftyreg

Python
1
star