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torchio
Medical imaging toolkit for deep learningawesome-medical-imaging
Awesome list of software that I use to do research in medical imaging.unet
"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.highresnet
PyTorch implementation of HighRes3DNetvesseg
Brain vessel segmentation using 3D convolutional neural networksSlicerPyTorch
This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.SlicerTorchIO
3D Slicer module for TorchIO.SlicerParcellation
3D Slicer modules for brain segmentation using deep learning.miccai-educational-challenge-2019
Tutorial about combining PyTorch and NiftyNet for deep learning and medical image computingresector
Algorithm to simulate resection surgery on brain MRI scans. Published in MICCAI 2020, extended in IJCARS.resseg-ijcars
Code, data and model for Pérez-García et al. 2021, "A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections"optimally-oriented-flux
SlicerEPISURG
3D Slicer module to visualize the EPISURG dataset and segment postoperative brain resection cavities using deep learning.spotify-bpm-splitter
App to split a Spotify list in children playlists sorted by tempogestures-miccai-2021
Code for "Pérez-García et al. 2021, Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures, MICCAI 2021".torchio-notebooks
arduino-claw-crane
Collaboration with artist Estefanía B. Flores for her master's thesis at Goldsmiths, University of London.resseg
RESSEG: automatic segmentation of postoperative brain cavities on 3D MRI using deep learning.ndPytools
Little Python tool to manage Hamamatsu NDPI filesfaces-map
Tool to embed faces in a 2D space using computer vision and machine learningjvol
JPEG compression for 3D volumes.creative-coding
p5.js examplesmiccai-educational-challenge-2020
My submission to the MICCAI Educational Challenge 2020.tf2pt
orientations
List of resources to better understand medical images orientation.arterys-models
vesseg-models
Weights for digital subtraction angiography segmentationurl-pdf-img
pyblock
advent-of-code-2022
My solutions for Advent of Code 2022slicer-blockmatching
3D Slicer module as a GUI for blockmatching, a robust registration tooldocker-dgx-marc
highresnet-models
phd-thesis-template
pytorch-tests
SlicerAnimation
3D Slicer module to animate objects using linear transformsblockmatching-nipype
scutoids
telegram-gpt-bot
Use ChatGPT with your voice (in any language) and Telegram.arduino-acronyms
cast-coursework
Computer-assisted Surgery and Therapy courseworkslicer-niftyreg
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