dcjones/SpuriousCoexpression.jl dcjones/SpuriousCoexpression.jl

  • Stars
    star
    3
  • Rank 3,963,521 (Top 79 %)
  • Language
    Julia
  • License
    MIT License
  • Created about 1 month ago
  • Updated about 1 month ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
dcjones/SpuriousCoexpression.jl
github

dcjones

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Benchmarking tool for spatial transcriptomics segmentation

More Repositories

1

hat-trie

An efficient trie implementation.
C
252
star
2

mk

make remade
Go
170
star
3

fastq-tools

Small utilities for working with fastq sequence files.
C
114
star
4

coitrees

A very fast interval tree data structure
Rust
111
star
5

quip

Compressing next-generation sequencing data with extreme prejudice.
C
78
star
6

Judo.jl

A Julia document generator
Julia
57
star
7

proseg

Probabilistic cell segmentation for in situ spatial transcriptomics
Rust
44
star
8

isolator

Rapid and robust analysis of RNA-Seq experiments.
C
32
star
9

colormake

colorize GNU make output
Python
30
star
10

polee

Analyzing RNA-Seq with approximate likelihood
Julia
26
star
11

subsample

Randomly sample lines from massive text files efficiently
C
17
star
12

RecursiveSparseBlocks.jl

julia interface to the librsb sparse matrix library
Julia
16
star
13

Skia.jl

Experimental skia bindings
Julia
11
star
14

seqbias

An R package to correct for sequence bias in RNA-Seq experiments.
C++
10
star
15

fastlog

A faster, reduced-precision logarithm function.
C
8
star
16

Switch.jl

A C-style switch statement for Julia
Julia
8
star
17

vanity

scRNA-Seq normalization for the vain
Python
7
star
18

cbgb

computational biology grab-bag: messy one-off scripts for a variety of tasks
C
6
star
19

Zlib.jl

zlib bindings for Julia
Julia
6
star
20

maxspin

Quantifying spatial information in spatial transcriptomics
Jupyter Notebook
5
star
21

PoleeClassifier.jl

Julia
5
star
22

color.jl

Pretty colors for Julia
Julia
5
star
23

sls

Stochastic L-Systems in Python
Python
5
star
24

Showoff.jl

Nicely format an array of n things for tables and plots
Julia
5
star
25

LazySequences.jl

Lazy sequences.
Julia
4
star
26

ragel-julia

A Julia backend for Ragel
C++
4
star
27

ulam-death-spiral

Exposing the depravity of the natural numbers.
CoffeeScript
3
star
28

isolator-paper

The Isolator Paper
Jupyter Notebook
3
star
29

gtf-parse-off

Experiments with parsing gene transfer format
Ragel in Ruby Host
3
star
30

seqsim

A simplistic RNA-Seq simulator.
C++
2
star
31

vim-mk

Vim syntax for mk
Vim Script
2
star
32

AnnDatas.jl

Julia compatibility for the anndata python module
Julia
2
star
33

quip-paper

A paper describing and evaluating the quip compression algorithm.
C
2
star
34

HATTries.jl

julia hat-trie bindings
Julia
1
star
35

GatedLinearNetworks.jl

A gaussian gated linear networks implementation
Julia
1
star
36

gadfly-static-html

Static HTML documentation for Gadfly
JavaScript
1
star
37

dotfiles

Vim Script
1
star
38

peakolator

World's fastest genomic segmentation algorithm.
C
1
star
39

Stepwell.jl

Julia
1
star
40

quip-website

A very simple website for quip.
JavaScript
1
star
41

peakolator-legacy

Some old code.
C++
1
star
42

julia-minimalist-vim

Alternate vim syntax definitions for Julia
Vim Script
1
star