dcjones/quip-paper

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Created about 12 years ago
Updated almost 12 years ago

dcjones/quip-paper

dcjones

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A paper describing and evaluating the quip compression algorithm.

hat-trie

An efficient trie implementation.

mk

fastq-tools

Small utilities for working with fastq sequence files.

coitrees

A very fast interval tree data structure

quip

Compressing next-generation sequencing data with extreme prejudice.

Judo.jl

A Julia document generator

isolator

Rapid and robust analysis of RNA-Seq experiments.

colormake

colorize GNU make output

polee

Analyzing RNA-Seq with approximate likelihood

subsample

Randomly sample lines from massive text files efficiently

RecursiveSparseBlocks.jl

julia interface to the librsb sparse matrix library

proseg

Probabilistic cell segmentation for in situ spatial transcriptomics

Skia.jl

Experimental skia bindings

seqbias

An R package to correct for sequence bias in RNA-Seq experiments.

Switch.jl

A C-style switch statement for Julia

fastlog

A faster, reduced-precision logarithm function.

vanity

scRNA-Seq normalization for the vain

cbgb

computational biology grab-bag: messy one-off scripts for a variety of tasks

Zlib.jl

zlib bindings for Julia

maxspin

Quantifying spatial information in spatial transcriptomics

Jupyter Notebook

PoleeClassifier.jl

color.jl

Pretty colors for Julia

sls

Stochastic L-Systems in Python

Showoff.jl

Nicely format an array of n things for tables and plots

LazySequences.jl

Lazy sequences.

ragel-julia

A Julia backend for Ragel

gtf-parse-off

Experiments with parsing gene transfer format

Ragel in Ruby Host

ulam-death-spiral

Exposing the depravity of the natural numbers.

isolator-paper

The Isolator Paper

Jupyter Notebook

seqsim

A simplistic RNA-Seq simulator.

vim-mk

Vim syntax for mk

AnnDatas.jl

Julia compatibility for the anndata python module

HATTries.jl

julia hat-trie bindings

GatedLinearNetworks.jl

A gaussian gated linear networks implementation

gadfly-static-html

Static HTML documentation for Gadfly

dotfiles

peakolator

World's fastest genomic segmentation algorithm.

quip-website

A very simple website for quip.

julia-minimalist-vim

Alternate vim syntax definitions for Julia

peakolator-legacy