• This repository has been archived on 19/Jan/2019
  • Stars
    star
    405
  • Rank 102,751 (Top 3 %)
  • Language
    Python
  • License
    Apache License 2.0
  • Created over 8 years ago
  • Updated almost 6 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

A deep NLP library, based on Keras / tf, focused on question answering (but useful for other NLP too)

Build Status Documentation Status codecov

DEPRECATED

DeepQA is built on top of Keras. We've decided that pytorch is a better platform for NLP research. We re-wrote DeepQA into a pytorch library called AllenNLP. There will be no more development of DeepQA. But, we're pretty excited about AllenNLP - if you're doing deep learning for natural language processing, you should check it out!

DeepQA

DeepQA is a library for doing high-level NLP tasks with deep learning, particularly focused on various kinds of question answering. DeepQA is built on top of Keras and TensorFlow, and can be thought of as an interface to these systems that makes NLP easier.

Specifically, this library provides the following benefits over plain Keras / TensorFlow:

  • It is easy to get NLP right in DeepQA.
    • In Keras, there are a lot of issues around padding sequences and masking that are not handled well in the main Keras code, and we have well-tested code that does the right thing for, e.g., computing attentions over padded sequences, padding all training instances to the same lengths (possibly dynamically by batch, to minimize computation wasted on padding tokens), or distributing text encoders across several sentences or words.
    • DeepQA provides a nice, consistent API around building NLP models. This API has functionality around processing data instances, embedding words and/or characters, easily getting various kinds of sentence encoders, and so on. It makes building models for high-level NLP tasks easy.
  • DeepQA provides a clean interface to training, validating, and debugging Keras models. It is easy to experiment with variants of a model family just by changing some parameters in a JSON file. For example, the particulars of how words are represented, either with fixed GloVe vectors, fine-tuned word2vec vectors, or a concatenation of those with a character-level CNN, are all specified by parameters in a JSON file, not in your actual code. This makes it trivial to switch the details of your model based on the data that you're working with.
  • DeepQA contains a number of state-of-the-art models, particularly focused around question answering systems (though we've dabbled in models for other tasks, as well). The actual model code for these systems is typically 50 lines or less.

Running DeepQA

Setting up a development environment

DeepQA is built using Python 3. The easiest way to set up a compatible environment is to use Conda. This will set up a virtual environment with the exact version of Python used for development along with all the dependencies needed to run DeepQA.

  1. Download and install Conda.

  2. Create a Conda environment with Python 3.

    conda create -n deep_qa python=3.5
    
  3. Now activate the Conda environment.

    source activate deep_qa
    
  4. Install the required dependencies.

    ./scripts/install_requirements.sh
    
  5. Set the PYTHONHASHSEED for repeatable experiments.

    export PYTHONHASHSEED=2157
    

You should now be able to test your installation with pytest -v. Congratulations! You now have a development environment for deep_qa that uses TensorFlow with CPU support. (For GPU support, see requirements.txt for information on how to install tensorflow-gpu).

Using DeepQA as an executable

To train or evaluate a model using a clone of the DeepQA repository, the recommended entry point is to use the run_model.py script. The first argument to that script is a parameter file, described more below. The second argument determines the behavior, either training a model or evaluating a trained model against a test dataset. Current valid options for the second argument are train and test (omitting the argument is the same as passing train).

Parameter files specify the model class you're using, model hyperparameters, training details, data files, data generator details, and many other things. You can see example parameter files in the examples directory. You can get some notion of what parameters are available by looking through the documentation.

Actually training a model will require input files, which you need to provide. We have a companion library, DeepQA Experiments, which was originally designed to produce input files and run experiments, and can be used to generate required data files for most of the tasks we have models for. We're moving towards putting the data processing code directly into DeepQA, so that DeepQA Experiments is not necessary, but for now, getting training data files in the right format is most easily done with DeepQA Experiments.

Using DeepQA as a library

If you are using DeepQA as a library in your own code, it is still straightforward to run your model. Instead of using the run_model.py script to do the training/evaluation, you can do it yourself as follows:

from deep_qa import run_model, evaluate_model, load_model, score_dataset

# Train a model given a json specification
run_model("/path/to/json/parameter/file")


# Load a model given a json specification
loaded_model = load_model("/path/to/json/parameter/file")
# Do some more exciting things with your model here!


# Get predictions from a pre-trained model on some test data specified in the json parameters.
predictions = score_dataset("/path/to/json/parameter/file")
# Compute your own metrics, or do beam search, or whatever you want with the predictions here.


# Compute Keras' metrics on a test dataset, using a pre-trained model.
evaluate_model("/path/to/json/parameter/file", ["/path/to/data/file"])

The rest of the usage guidelines, examples, etc., are the same as when working in a clone of the repository.

Implementing your own models

To implement a new model in DeepQA, you need to subclass TextTrainer. There is documentation on what is necessary for this; see in particular the Abstract methods section. For a simple example of a fully functional model, see the simple sequence tagger, which has about 20 lines of actual implementation code.

In order to train, load and evaluate models which you have written yourself, simply pass an additional argument to the functions above and remove the model_class parameter from your json specification. For example:

from deep_qa import run_model
from .local_project import MyGreatModel

# Train a model given a json specification (without a "model_class" attribute).
run_model("/path/to/json/parameter/file", model_class=MyGreatModel)

If you're doing a new task, or a new variant of a task with a different input/output specification, you probably also need to implement an Instance type. The Instance handles reading data from a file and converting it into numpy arrays that can be used for training and evaluation. This only needs to happen once for each input/output spec.

Implemented models

DeepQA has implementations of state-of-the-art methods for a variety of tasks. Here are a few of them:

Reading comprehension

Entailment

Datasets

This code allows for easy experimentation with the following datasets:

Note that the data processing code for most of this currently lives in DeepQA Experiments, however.

Contributing

If you use this code and think something could be improved, pull requests are very welcome. Opening an issue is ok, too, but we can respond much more quickly to pull requests.

Contributors

License

This code is released under the terms of the Apache 2 license.

More Repositories

1

allennlp

An open-source NLP research library, built on PyTorch.
Python
11,691
star
2

OLMo

Modeling, training, eval, and inference code for OLMo
Python
3,949
star
3

RL4LMs

A modular RL library to fine-tune language models to human preferences
Python
2,020
star
4

longformer

Longformer: The Long-Document Transformer
Python
1,955
star
5

bilm-tf

Tensorflow implementation of contextualized word representations from bi-directional language models
Python
1,621
star
6

scispacy

A full spaCy pipeline and models for scientific/biomedical documents.
Python
1,566
star
7

bi-att-flow

Bi-directional Attention Flow (BiDAF) network is a multi-stage hierarchical process that represents context at different levels of granularity and uses a bi-directional attention flow mechanism to achieve a query-aware context representation without early summarization.
Python
1,524
star
8

scibert

A BERT model for scientific text.
Python
1,432
star
9

ai2thor

An open-source platform for Visual AI.
C#
1,010
star
10

open-instruct

Python
932
star
11

XNOR-Net

ImageNet classification using binary Convolutional Neural Networks
Lua
839
star
12

mmc4

MultimodalC4 is a multimodal extension of c4 that interleaves millions of images with text.
Python
793
star
13

dolma

Data and tools for generating and inspecting OLMo pre-training data.
Python
774
star
14

s2orc

S2ORC: The Semantic Scholar Open Research Corpus: https://www.aclweb.org/anthology/2020.acl-main.447/
Python
745
star
15

scitldr

Python
734
star
16

natural-instructions

Expanding natural instructions
Python
690
star
17

visprog

Official code for VisProg (CVPR 2023 Best Paper!)
Python
642
star
18

papermage

library supporting NLP and CV research on scientific papers
Python
605
star
19

science-parse

Science Parse parses scientific papers (in PDF form) and returns them in structured form.
Java
566
star
20

writing-code-for-nlp-research-emnlp2018

A companion repository for the "Writing code for NLP Research" Tutorial at EMNLP 2018
Python
558
star
21

pdffigures2

Given a scholarly PDF, extract figures, tables, captions, and section titles.
Scala
514
star
22

allennlp-models

Officially supported AllenNLP models
Python
512
star
23

tango

Organize your experiments into discrete steps that can be cached and reused throughout the lifetime of your research project.
Python
507
star
24

specter

SPECTER: Document-level Representation Learning using Citation-informed Transformers
Python
495
star
25

objaverse-xl

๐Ÿช Objaverse-XL is a Universe of 10M+ 3D Objects. Contains API Scripts for Downloading and Processing!
Python
490
star
26

dont-stop-pretraining

Code associated with the Don't Stop Pretraining ACL 2020 paper
Python
488
star
27

unified-io-2

Python
471
star
28

macaw

Multi-angle c(q)uestion answering
Python
451
star
29

document-qa

Python
420
star
30

scholarphi

An interactive PDF reader.
Python
410
star
31

acl2018-semantic-parsing-tutorial

Materials from the ACL 2018 tutorial on neural semantic parsing
402
star
32

unifiedqa

UnifiedQA: Crossing Format Boundaries With a Single QA System
Python
384
star
33

kb

KnowBert -- Knowledge Enhanced Contextual Word Representations
Python
359
star
34

pawls

Software that makes labeling PDFs easy.
Python
356
star
35

PeerRead

Data and code for Kang et al., NAACL 2018's paper titled "A Dataset of Peer Reviews (PeerRead): Collection, Insights and NLP Applications"
Python
354
star
36

naacl2021-longdoc-tutorial

Python
343
star
37

openie-standalone

Quality information extraction at web scale. Edit
Scala
329
star
38

python-package-template

A template repo for Python packages
Python
318
star
39

allenact

An open source framework for research in Embodied-AI from AI2.
Python
295
star
40

acl2022-zerofewshot-tutorial

293
star
41

ir_datasets

Provides a common interface to many IR ranking datasets.
Python
291
star
42

s2orc-doc2json

Parsers for scientific papers (PDF2JSON, TEX2JSON, JATS2JSON)
Python
290
star
43

beaker-cli

A collaborative platform for rapid and reproducible research.
Go
230
star
44

Holodeck

CVPR 2024: Language Guided Generation of 3D Embodied AI Environments.
Python
220
star
45

procthor

๐Ÿ˜๏ธ Scaling Embodied AI by Procedurally Generating Interactive 3D Houses
Python
214
star
46

comet-atomic-2020

Python
212
star
47

FineGrainedRLHF

Python
209
star
48

fm-cheatsheet

Website for hosting the Open Foundation Models Cheat Sheet.
Python
207
star
49

spv2

Science-parse version 2
Python
206
star
50

scifact

Data and models for the SciFact verification task.
Python
206
star
51

OLMo-Eval

Evaluation suite for LLMs
Python
200
star
52

unified-io-inference

Jupyter Notebook
196
star
53

allennlp-demo

Code for the AllenNLP demo.
TypeScript
191
star
54

lumos

Code and data for "Lumos: Learning Agents with Unified Data, Modular Design, and Open-Source LLMs"
Python
190
star
55

citeomatic

A citation recommendation system that allows users to find relevant citations for their paper drafts. The tool is backed by Semantic Scholar's OpenCorpus dataset.
Jupyter Notebook
182
star
56

cartography

Dataset Cartography: Mapping and Diagnosing Datasets with Training Dynamics
Jupyter Notebook
180
star
57

savn

Learning to Learn how to Learn: Self-Adaptive Visual Navigation using Meta-Learning (https://arxiv.org/abs/1812.00971)
Python
175
star
58

vampire

Variational Methods for Pretraining in Resource-limited Environments
Python
173
star
59

objaverse-rendering

๐Ÿ“ท Scripts for rendering Objaverse
Python
169
star
60

hidden-networks

Python
164
star
61

ScienceWorld

ScienceWorld is a text-based virtual environment centered around accomplishing tasks from the standardized elementary science curriculum.
Scala
156
star
62

vila

Incorporating VIsual LAyout Structures for Scientific Text Classification
Python
155
star
63

mmda

multimodal document analysis
Jupyter Notebook
154
star
64

cord19

Get started with CORD-19
149
star
65

PRIMER

The official code for PRIMERA: Pyramid-based Masked Sentence Pre-training for Multi-document Summarization
Python
145
star
66

dnw

Discovering Neural Wirings (https://arxiv.org/abs/1906.00586)
Python
139
star
67

tpu_pretrain

LM Pretraining with PyTorch/TPU
Python
129
star
68

deepfigures-open

Companion code to the paper "Extracting Scientific Figures with Distantly Supervised Neural Networks" ๐Ÿค–
Python
129
star
69

catwalk

This project studies the performance and robustness of language models and task-adaptation methods.
Python
129
star
70

allentune

Hyperparameter Search for AllenNLP
Python
128
star
71

lm-explorer

interactive explorer for language models
Python
127
star
72

pdffigures

Command line tool to extract figures, tables, and captions from scholarly documents in PDF form.
C++
125
star
73

SciREX

Data/Code Repository for https://api.semanticscholar.org/CorpusID:218470122
Python
125
star
74

s2-folks

Public space for the user community of Semantic Scholar APIs to share scripts, report issues, and make suggestions.
125
star
75

scidocs

Dataset accompanying the SPECTER model
Python
124
star
76

gooaq

Question-answers, collected from Google
Python
116
star
77

OpenBookQA

Code for experiments on OpenBookQA from the EMNLP 2018 paper "Can a Suit of Armor Conduct Electricity? A New Dataset for Open Book Question Answering"
Python
113
star
78

allennlp-as-a-library-example

A simple example for how to build your own model using AllenNLP as a dependency.
Python
113
star
79

alexafsm

With alexafsm, developers can model dialog agents with first-class concepts such as states, attributes, transition, and actions. alexafsm also provides visualization and other tools to help understand, test, debug, and maintain complex FSM conversations.
Python
108
star
80

allennlp-semparse

A framework for building semantic parsers (including neural module networks) with AllenNLP, built by the authors of AllenNLP
Python
107
star
81

scicite

Repository for NAACL 2019 paper on Citation Intent prediction
Python
106
star
82

peS2o

Pretraining Efficiently on S2ORC!
105
star
83

multimodalqa

Python
102
star
84

commonsense-kg-completion

Python
102
star
85

real-toxicity-prompts

Jupyter Notebook
101
star
86

ai2thor-rearrangement

๐Ÿ”€ Visual Room Rearrangement
Python
97
star
87

embodied-clip

Official codebase for EmbCLIP
Python
97
star
88

aristo-mini

Aristo mini is a light-weight question answering system that can quickly evaluate Aristo science questions with an evaluation web server and the provided baseline solvers.
Python
96
star
89

s2search

The Semantic Scholar Search Reranker
Python
93
star
90

elastic

Python
91
star
91

reward-bench

RewardBench: the first evaluation tool for reward models.
Python
90
star
92

flex

Few-shot NLP benchmark for unified, rigorous eval
Python
89
star
93

gpv-1

A task-agnostic vision-language architecture as a step towards General Purpose Vision
Jupyter Notebook
89
star
94

manipulathor

ManipulaTHOR, a framework that facilitates visual manipulation of objects using a robotic arm
Jupyter Notebook
86
star
95

medicat

Dataset of medical images, captions, subfigure-subcaption annotations, and inline textual references
Python
85
star
96

propara

ProPara (Process Paragraph Comprehension) dataset and models
Python
82
star
97

allennlp-guide

Code and material for the AllenNLP Guide
Python
81
star
98

hierplane

A tool for visualizing trees, tailored specifically to the analysis of parse trees.
JavaScript
81
star
99

S2AND

Semantic Scholar's Author Disambiguation Algorithm & Evaluation Suite
Python
78
star
100

ARC-Solvers

ARC Question Solvers
Python
78
star