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NeuralPlayground
The standardised environment for the hippocampus and entorhinal cortex modelslasagna
3-D imaging visualisation through slicingStitchIt
Stitching of large tiled datasetsPyper
Motion Trackingmasiv
MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging dataneuro
Visualisation and analysis of brain imaging dataAllenBrainAPI
Access the Allen Brain Atlas API from MATLABaMAP
aMAPpython-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.crabs-exploration
A toolkit for detecting and tracking crabs in the field.BakingTray
Serial-section automated anatomy extension for ScanImageara_tools
Analysis of mouse brain STP data with respect to the Allen Reference AtlasWAZP
Wasp Animal-tracking Zoo project with Pose estimationmicroharp
A Harp protocol and device application framework micropython package.ScanImageTileScan
MATLAB-based ScanImage tile scanneraeon_acquisition
Task control and acquisition systems for Project Aeon.aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.aeon_blog
Project Aeon's "meta" repo that details the project, with a focus on dev practices and notes on technology review, challenges and insights.RCWG
Research Culture Working Groupsswc-computing
Community driven guides to solving computational problems at SWC/GCNUaeon_experiments
Experiment workflows for Project Aeonsoftware-skills
Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unitlooming_spots
btpytools
Python-based BakingTray and StichIt helper toolsrc2_analysis
neuriteTracer
MaSIV neurite tracer pluginaeon_docs
Online docs repo for Project Aeon.Love Open Source and this site? Check out how you can help us