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NeuralPlayground
The standardised environment for the hippocampus and entorhinal cortex modelslasagna
3-D imaging visualisation through slicingStitchIt
Stitching of large tiled datasetsPyper
Motion Trackingmasiv
MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging dataneuro
Visualisation and analysis of brain imaging dataAllenBrainAPI
Access the Allen Brain Atlas API from MATLABaMAP
aMAPpython-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.crabs-exploration
A toolkit for detecting and tracking crabs in the field.BakingTray
Serial-section automated anatomy extension for ScanImageara_tools
Analysis of mouse brain STP data with respect to the Allen Reference AtlasWAZP
Wasp Animal-tracking Zoo project with Pose estimationmicroharp
A Harp protocol and device application framework micropython package.ScanImageTileScan
MATLAB-based ScanImage tile scanneraeon_acquisition
Task control and acquisition systems for Project Aeon.aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.RCWG
Research Culture Working Groupsrc2_matlab
swc-computing
Community driven guides to solving computational problems at SWC/GCNUaeon_experiments
Experiment workflows for Project Aeonsoftware-skills
Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unitlooming_spots
btpytools
Python-based BakingTray and StichIt helper toolsrc2_analysis
neuriteTracer
MaSIV neurite tracer pluginaeon_docs
Online docs repo for Project Aeon.Love Open Source and this site? Check out how you can help us