Explore @SainsburyWellcomeCentre Open Source projects

@SainsburyWellcomeCentre

SainsburyWellcomeCentre

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Registered over 9 years ago
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Python
48.1 %

MATLAB
33.3 %

HTML
3.7 %

C#
3.7 %

Ruby
3.7 %

Java
3.7 %

Shell
3.7 %

NeuralPlayground

The standardised environment for the hippocampus and entorhinal cortex models

lasagna

3-D imaging visualisation through slicing

StitchIt

Stitching of large tiled datasets

Pyper

Motion Tracking

masiv

MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data

neuro

Visualisation and analysis of brain imaging data

AllenBrainAPI

Access the Allen Brain Atlas API from MATLAB

aMAP

python-cookiecutter

Utility to create a basic Python project structure with tests, CI etc.

crabs-exploration

A toolkit for detecting and tracking crabs in the field.

BakingTray

Serial-section automated anatomy extension for ScanImage

ara_tools

Analysis of mouse brain STP data with respect to the Allen Reference Atlas

WAZP

Wasp Animal-tracking Zoo project with Pose estimation

microharp

A Harp protocol and device application framework micropython package.

ScanImageTileScan

MATLAB-based ScanImage tile scanner

aeon_acquisition

Task control and acquisition systems for Project Aeon.

aeon_mecha

Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.

aeon_blog

Project Aeon's "meta" repo that details the project, with a focus on dev practices and notes on technology review, challenges and insights.

RCWG

Research Culture Working Groups

rc2_matlab

swc-computing

Community driven guides to solving computational problems at SWC/GCNU

aeon_experiments

Experiment workflows for Project Aeon

software-skills

Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit

looming_spots

btpytools

Python-based BakingTray and StichIt helper tools

rc2_analysis

neuriteTracer

MaSIV neurite tracer plugin

aeon_docs

Online docs repo for Project Aeon.