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seqan
SeqAn's official repository.seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.lambda
LAMBDA β the Local Aligner for Massive Biological DatAflexbar
flexible barcode and adapter removalraptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.slimm
Species Level Identification of Microbes from Metagenomesneedle
A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequencesvaquita
Identification of structural variationssharg-parser
The modern argument parser for c++ toolschopper
A tool for partitioning a set of sequences into similar batches.iGenVar
The official repository for the iGenVar project.app-template
This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.seqan3-doc
All the scripts for generating API docs on ReadTheDocslearning-resources
Provides online material and tutorials for modern C++, efficient data structures and algorithms.lemon
Clone of the latest release of the lemon library (only the headers)anise_basil
Methods for the detection and assembly of novel sequence in high-throughput sequencing dataknime_seqan_workflows
KNIME example workflows for NGS data analysis with SeqAn apps.lara
LaRA 2: Lagrangian Relaxed structural Alignmenthibf
HIBF and IBFbench
SeqAn Benchmarksseqan-py
Provides python bindings for SeqAn.product_backlog
This repository is used as product backlog for all SeqAn relevant backlog items. This is intended to organise the work for the team.minions
Comparison between different methods to simplify sequence datamason
Tools for Biological Sequence Simulationseqan_knime_plugin
Build infrastructure for the seqan KNIME pluginflexcat
Fork of seqan/flexbar by @catkiraseqan3-infrastructure
Infrastructure for seqan3 including nightly builds, continues integration, continues deployment, coverage tests, static code analysis and containerisation.library-template
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