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seqan
SeqAn's official repository.seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.lambda
LAMBDA – the Local Aligner for Massive Biological DatAflexbar
flexible barcode and adapter removalraptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.slimm
Species Level Identification of Microbes from Metagenomesneedle
A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequencesvaquita
Identification of structural variationssharg-parser
The modern argument parser for c++ toolsiGenVar
The official repository for the iGenVar project.app-template
This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.seqan3-doc
All the scripts for generating API docs on ReadTheDocslearning-resources
Provides online material and tutorials for modern C++, efficient data structures and algorithms.lemon
Clone of the latest release of the lemon library (only the headers)anise_basil
Methods for the detection and assembly of novel sequence in high-throughput sequencing dataknime_seqan_workflows
KNIME example workflows for NGS data analysis with SeqAn apps.lara
LaRA 2: Lagrangian Relaxed structural Alignmenthibf
HIBF and IBFbench
SeqAn Benchmarksseqan-py
Provides python bindings for SeqAn.product_backlog
This repository is used as product backlog for all SeqAn relevant backlog items. This is intended to organise the work for the team.Hierachical_Interleaved_Bloomfilter
Work in progress for the HIBF.minions
Comparison between different methods to simplify sequence datamason
Tools for Biological Sequence Simulationseqan_knime_plugin
Build infrastructure for the seqan KNIME pluginflexcat
Fork of seqan/flexbar by @catkiraseqan3-infrastructure
Infrastructure for seqan3 including nightly builds, continues integration, continues deployment, coverage tests, static code analysis and containerisation.library-template
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