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SeqAn (@seqan)

seqan

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seqan

SeqAn's official repository.

seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

lambda

LAMBDA – the Local Aligner for Massive Biological DatA

flexbar

flexible barcode and adapter removal

raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

slimm

Species Level Identification of Microbes from Metagenomes

needle

A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

vaquita

Identification of structural variations

sharg-parser

The modern argument parser for c++ tools

chopper

A tool for partitioning a set of sequences into similar batches.

iGenVar

The official repository for the iGenVar project.

app-template

This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.

seqan3-doc

All the scripts for generating API docs on ReadTheDocs

learning-resources

Provides online material and tutorials for modern C++, efficient data structures and algorithms.

lemon

Clone of the latest release of the lemon library (only the headers)

anise_basil

Methods for the detection and assembly of novel sequence in high-throughput sequencing data

knime_seqan_workflows

KNIME example workflows for NGS data analysis with SeqAn apps.

lara

LaRA 2: Lagrangian Relaxed structural Alignment

hibf

bench

SeqAn Benchmarks

seqan-py

Provides python bindings for SeqAn.

product_backlog

This repository is used as product backlog for all SeqAn relevant backlog items. This is intended to organise the work for the team.

Hierachical_Interleaved_Bloomfilter

Work in progress for the HIBF.

minions

Comparison between different methods to simplify sequence data

mason

Tools for Biological Sequence Simulation

seqan_knime_plugin

Build infrastructure for the seqan KNIME plugin

flexcat

Fork of seqan/flexbar by @catkira

seqan3-infrastructure

Infrastructure for seqan3 including nightly builds, continues integration, continues deployment, coverage tests, static code analysis and containerisation.

library-template