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pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.prodigy
Predict the binding affinity of protein-protein complexes from structural datahaddock3
Official repo of the modular BioExcel version of HADDOCKhaddock-tools
Set of useful HADDOCK utility scriptsarctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural informationfcc
Fraction of Common Contacts Clustering Algorithm for Protein Structurespowerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density mapsprodigy-lig
Prediction of Protein-Small molecule binding affinitieshaddocking.github.io
Webpage of the Bonvinlab @ Utrecht University and HADDOCK softwarebinding-affinity-benchmark
Protein-protein binding affinity benchmarkBM5-clean
Docking benchmark 5 - cleaned and ready to use for HADDOCKprotein-peptide-docking_1CZY
disvis
Visualisation of conformational space restriction by distance restraintsprodigy-cryst
Contacts-based classifier of biological and crystallographic interfacesMemCplxDB
Membrane protein complexes docking benchmarkcyclic-peptides
Cyclic-peptide - protein complexes benchmark and associated scripts and data3D-DART-server
3D-DART web server repositoryiSee
DACUM
The Database of binding Affinity Change Upon Mutations in protein complexesHADDOCK-binding-sites-tutorial
Prot-DNABenchmark
Protein-DNA docking benchmarkEDES
shape-restrained-haddocking
ai-antibodies
3D-DART
Standalone code for 3D-DART (originally developed by Marc van Dijk)protein-glycans
whiscy
Bioinformatic tool to predict structural protein-protein interfaceshaddock-mmcif
Encode information from a HADDOCK run to a cif file to be deposited in PDB-Dev.haddock-runner
Run large scale HADDOCK simulations using multiple input molecules in different scenarioscport
CPORT is a Consensus Prediction Of interface Residues in Transient complexes used to predict protein-protein interface residues.CASP-CAPRI-T70-tutorial
powerfit-tutorial
Simple tutorial to showcase the use of PowerFit.D3R-tools
A collection of scripts of data relating to the D3R Grand Challenge competitonshaddock_param_tools
Python scripts to manipulate HADDOCK2.4 parameter files (*.json)fandas
Repository of the FANDAS code for prediction ssNMR spectra from structuresamplex
MD-scoring
Script and associated data for MD-based scoring of HADDOCK clustersprotein-peptide
Protein-peptide HADDOCK-ready docking benchmarkcontact-filtering
DisVis-based filtering of contacts from co-evolution data (or other sources)physiological_homodimers_benchmark
vmbuilder
VM Appliance Developer EnvironmentSARS-COV2-NTD-SIA-modelling
Modelling of the binding of various sialic acid-containing oligosaccharides to the NTD domain of the spike protein of SARS-CoV2refine-EM-complexes
Repository containing the data set, analysis results and scripts associated with our manuscript on "Interface Refinement of Low-to-Medium Resolution Cryo-EM Complexes using HADDOCK2.4"proABC-2
Deep learning framework to predict antibody paratope residueshaddock24-protocol
Data for performing HADDOCK2.4 protocolshaddock-restraints
Generate restraints to be used in HADDOCKLove Open Source and this site? Check out how you can help us