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pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.prodigy
Predict the binding affinity of protein-protein complexes from structural datahaddock3
Official repo of the modular BioExcel version of HADDOCKhaddock-tools
Set of useful HADDOCK utility scriptsarctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural informationfcc
Fraction of Common Contacts Clustering Algorithm for Protein Structurespowerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density mapsHADDOCK-antibody-antigen
Material to run the HADDOCK antibody-antigen modelling protocolhaddocking.github.io
Webpage of the Bonvinlab @ Utrecht University and HADDOCK softwareprodigy-lig
Prediction of Protein-Small molecule binding affinitiesBM5-clean
Docking benchmark 5 - cleaned and ready to use for HADDOCKbinding-affinity-benchmark
Protein-protein binding affinity benchmarkdisvis
Visualisation of conformational space restriction by distance restraintsprotein-peptide-docking_1CZY
prodigy-cryst
Contacts-based classifier of biological and crystallographic interfacesMemCplxDB
Membrane protein complexes docking benchmarkcyclic-peptides
Cyclic-peptide - protein complexes benchmark and associated scripts and data3D-DART-server
3D-DART web server repositoryiSee
DACUM
The Database of binding Affinity Change Upon Mutations in protein complexesHADDOCK-binding-sites-tutorial
Prot-DNABenchmark
Protein-DNA docking benchmarkshape-restrained-haddocking
3D-DART
Standalone code for 3D-DART (originally developed by Marc van Dijk)whiscy
Bioinformatic tool to predict structural protein-protein interfacesEDES
cport
CPORT is a Consensus Prediction Of interface Residues in Transient complexes used to predict protein-protein interface residues.CASP-CAPRI-T70-tutorial
powerfit-tutorial
Simple tutorial to showcase the use of PowerFit.D3R-tools
A collection of scripts of data relating to the D3R Grand Challenge competitonsprotein-glycans
haddock_param_tools
Python scripts to manipulate HADDOCK2.4 parameter files (*.json)fandas
Repository of the FANDAS code for prediction ssNMR spectra from structurehaddock-mmcif
Encode information from a HADDOCK run to a cif file to be deposited in PDB-Dev.ai-antibodies
MD-scoring
Script and associated data for MD-based scoring of HADDOCK clusterscontact-filtering
DisVis-based filtering of contacts from co-evolution data (or other sources)physiological_homodimers_benchmark
vmbuilder
VM Appliance Developer Environmentsamplex
SARS-COV2-NTD-SIA-modelling
Modelling of the binding of various sialic acid-containing oligosaccharides to the NTD domain of the spike protein of SARS-CoV2refine-EM-complexes
Repository containing the data set, analysis results and scripts associated with our manuscript on "Interface Refinement of Low-to-Medium Resolution Cryo-EM Complexes using HADDOCK2.4"Love Open Source and this site? Check out how you can help us