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pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.prodigy
Predict the binding affinity of protein-protein complexes from structural datahaddock3
Official repo of the modular BioExcel version of HADDOCKhaddock-tools
Set of useful HADDOCK utility scriptsarctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural informationfcc
Fraction of Common Contacts Clustering Algorithm for Protein StructuresHADDOCK-antibody-antigen
Material to run the HADDOCK antibody-antigen modelling protocolpowerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density mapsprodigy-lig
Prediction of Protein-Small molecule binding affinitieshaddocking.github.io
Webpage of the Bonvinlab @ Utrecht University and HADDOCK softwarebinding-affinity-benchmark
Protein-protein binding affinity benchmarkBM5-clean
Docking benchmark 5 - cleaned and ready to use for HADDOCKprotein-peptide-docking_1CZY
disvis
Visualisation of conformational space restriction by distance restraintsprodigy-cryst
Contacts-based classifier of biological and crystallographic interfacesMemCplxDB
Membrane protein complexes docking benchmarkcyclic-peptides
Cyclic-peptide - protein complexes benchmark and associated scripts and data3D-DART-server
3D-DART web server repositoryiSee
DACUM
The Database of binding Affinity Change Upon Mutations in protein complexesHADDOCK-binding-sites-tutorial
Prot-DNABenchmark
Protein-DNA docking benchmarkEDES
shape-restrained-haddocking
ai-antibodies
3D-DART
Standalone code for 3D-DART (originally developed by Marc van Dijk)protein-glycans
whiscy
Bioinformatic tool to predict structural protein-protein interfaceshaddock-mmcif
Encode information from a HADDOCK run to a cif file to be deposited in PDB-Dev.haddock-runner
Run large scale HADDOCK simulations using multiple input molecules in different scenarioscport
CPORT is a Consensus Prediction Of interface Residues in Transient complexes used to predict protein-protein interface residues.CASP-CAPRI-T70-tutorial
powerfit-tutorial
Simple tutorial to showcase the use of PowerFit.D3R-tools
A collection of scripts of data relating to the D3R Grand Challenge competitonshaddock_param_tools
Python scripts to manipulate HADDOCK2.4 parameter files (*.json)fandas
Repository of the FANDAS code for prediction ssNMR spectra from structureMD-scoring
Script and associated data for MD-based scoring of HADDOCK clustersprotein-peptide
Protein-peptide HADDOCK-ready docking benchmarkcontact-filtering
DisVis-based filtering of contacts from co-evolution data (or other sources)physiological_homodimers_benchmark
vmbuilder
VM Appliance Developer EnvironmentSARS-COV2-NTD-SIA-modelling
Modelling of the binding of various sialic acid-containing oligosaccharides to the NTD domain of the spike protein of SARS-CoV2refine-EM-complexes
Repository containing the data set, analysis results and scripts associated with our manuscript on "Interface Refinement of Low-to-Medium Resolution Cryo-EM Complexes using HADDOCK2.4"proABC-2
Deep learning framework to predict antibody paratope residueshaddock24-protocol
Data for performing HADDOCK2.4 protocolshaddock-restraints
Generate restraints to be used in HADDOCKLove Open Source and this site? Check out how you can help us