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wf-human-variation
wf-single-cell
wf-transcriptomes
wf-metagenomics
Metagenomic classification of long-read sequencing datapychopper
cDNA read preprocessingtutorials
modbam2bed
wf-artic
ARTIC SARS-CoV-2 workflow and reportingfastcat
Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.wf-basecalling
wf-pore-c
wf-clone-validation
wf-alignment
wf-bacterial-genomes
Small variant calling for haploid sampleskraken2-server
Kraken2 Serverwf-16s
ezcharts
wf-amplicon
wf-flu
wf-template
Nextflow workflow template repositorypore-c-py
labslauncher
Management application for Epi2MeLabs notebook serverwf-somatic-variation
wf-isoforms
igv-jupyterlab
Integrate Genome Viewer for JupyterLab 3wf-human-sv
Structural variation workflow (and benchmarking) using minimap2 and sniffles2wf-cnv
wf-human-snp
Small variant calling for human samplesaplanat
Simplifies bokeh plotting, particularly tailored for JupyterLabjupyterlab-autorun-cells
Allows toggling of code cells to execute automatically after opening a notebook.epi2me-labs.github.io
jupyterlab-play-cell-button
Jupyterlab extension attaching a play button to cellswf-aav-qc
wf-cas9
jupyterlab-code-cell-collapser
A Google Colab inspired code cell collapsernanolabs
Nanolabs container stackwf-mpx
epi2melabs
Utility functions epi2melabs notebookswf-tb-amr
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