• Stars
    star
    13
  • Rank 1,472,616 (Top 30 %)
  • Language
    Python
  • License
    Other
  • Created over 3 years ago
  • Updated 8 days ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Nextflow workflow template repository

More Repositories

1

wf-human-variation

Nextflow
84
star
2

wf-single-cell

Python
64
star
3

wf-transcriptomes

Python
64
star
4

tutorials

Jupyter Notebook
48
star
5

modbam2bed

C
43
star
6

wf-artic

ARTIC SARS-CoV-2 workflow and reporting
Groovy
40
star
7

wf-metagenomics

Metagenomic classification of long-read sequencing data
Nextflow
36
star
8

pychopper

cDNA read preprocessing
Python
35
star
9

fastcat

Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
C
28
star
10

wf-basecalling

Nextflow
25
star
11

wf-pore-c

Nextflow
25
star
12

wf-clone-validation

Python
18
star
13

kraken2-server

Kraken2 Server
C++
17
star
14

wf-bacterial-genomes

Small variant calling for haploid samples
Python
17
star
15

ezcharts

Python
15
star
16

wf-flu

Groovy
14
star
17

wf-alignment

Python
13
star
18

labslauncher

Management application for Epi2MeLabs notebook server
Python
11
star
19

wf-isoforms

Python
9
star
20

igv-jupyterlab

Integrate Genome Viewer for JupyterLab 3
Python
9
star
21

wf-amplicon

Python
9
star
22

wf-human-sv

Structural variation workflow (and benchmarking) using minimap2 and sniffles2
Groovy
9
star
23

wf-somatic-variation

Nextflow
9
star
24

wf-human-snp

Small variant calling for human samples
Groovy
8
star
25

aplanat

Simplifies bokeh plotting, particularly tailored for JupyterLab
Python
8
star
26

wf-16s

Nextflow
7
star
27

jupyterlab-autorun-cells

Allows toggling of code cells to execute automatically after opening a notebook.
Python
7
star
28

pore-c-py

Python
7
star
29

wf-cnv

Groovy
7
star
30

epi2me-labs.github.io

HTML
6
star
31

jupyterlab-play-cell-button

Jupyterlab extension attaching a play button to cells
TypeScript
5
star
32

jupyterlab-code-cell-collapser

A Google Colab inspired code cell collapser
TypeScript
4
star
33

wf-cas9

Groovy
3
star
34

wf-aav-qc

Python
2
star
35

nanolabs

Nanolabs container stack
Shell
2
star
36

wf-mpx

Groovy
2
star
37

epi2melabs

Utility functions epi2melabs notebooks
Python
2
star
38

pykraken2

Python
1
star
39

wf-tb-amr

Python
1
star