• Stars
    star
    8
  • Rank 2,086,452 (Top 42 %)
  • Language
    Python
  • License
    Other
  • Created over 4 years ago
  • Updated about 1 year ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Simplifies bokeh plotting, particularly tailored for JupyterLab

More Repositories

1

wf-human-variation

Nextflow
92
star
2

wf-single-cell

Python
68
star
3

wf-transcriptomes

Python
64
star
4

wf-metagenomics

Metagenomic classification of long-read sequencing data
Nextflow
49
star
5

pychopper

cDNA read preprocessing
Python
48
star
6

tutorials

Jupyter Notebook
48
star
7

modbam2bed

C
45
star
8

wf-artic

ARTIC SARS-CoV-2 workflow and reporting
Nextflow
44
star
9

fastcat

Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
C
31
star
10

wf-basecalling

Nextflow
28
star
11

wf-pore-c

Nextflow
27
star
12

wf-clone-validation

Nextflow
24
star
13

wf-alignment

Nextflow
21
star
14

wf-bacterial-genomes

Small variant calling for haploid samples
Python
21
star
15

kraken2-server

Kraken2 Server
C++
20
star
16

wf-16s

Nextflow
17
star
17

ezcharts

Python
17
star
18

wf-amplicon

Nextflow
17
star
19

wf-flu

Nextflow
15
star
20

wf-template

Nextflow workflow template repository
Nextflow
14
star
21

pore-c-py

Python
11
star
22

labslauncher

Management application for Epi2MeLabs notebook server
Python
11
star
23

wf-somatic-variation

Nextflow
10
star
24

wf-isoforms

Python
9
star
25

igv-jupyterlab

Integrate Genome Viewer for JupyterLab 3
Python
9
star
26

wf-human-sv

Structural variation workflow (and benchmarking) using minimap2 and sniffles2
Groovy
9
star
27

wf-cnv

Groovy
8
star
28

wf-human-snp

Small variant calling for human samples
Groovy
8
star
29

jupyterlab-autorun-cells

Allows toggling of code cells to execute automatically after opening a notebook.
Python
7
star
30

epi2me-labs.github.io

HTML
7
star
31

jupyterlab-play-cell-button

Jupyterlab extension attaching a play button to cells
TypeScript
5
star
32

wf-aav-qc

Python
4
star
33

wf-cas9

Groovy
4
star
34

jupyterlab-code-cell-collapser

A Google Colab inspired code cell collapser
TypeScript
4
star
35

nanolabs

Nanolabs container stack
Shell
2
star
36

wf-mpx

Nextflow
2
star
37

epi2melabs

Utility functions epi2melabs notebooks
Python
2
star
38

pykraken2

Python
1
star
39

wf-tb-amr

Python
1
star