• Stars
    star
    2
  • Language
    Python
  • Created about 14 years ago
  • Updated almost 13 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

In-progress code for various research projects

More Repositories

1

bcbb

Incubator for useful bioinformatics code, primarily in Python and R
Python
582
star
2

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
Python
257
star
3

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure
Clojure
67
star
4

homebrew-cbl

Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science
Ruby
19
star
5

biosqlweb

BioSQL web
Python
13
star
6

clj-blend

Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j
Clojure
10
star
7

bcbio.prioritize

Prioritize small variants, structural variants and coverage based on biological inputs
Clojure
7
star
8

r-var

Exploring our genomic variability
Clojure
7
star
9

bcbio-conda

Deprecated conda recipes for bcbio python code and dependencies -- migrated to bioconda
Python
7
star
10

dotfiles

~chapmanb dotfile organization for backup and sychronization
Shell
4
star
11

bcbio.pipeline

Next-generation sequencing analysis pipelines built on Hadoop and Cascalog
Java
4
star
12

clj-gcon

Genome Connector: Clojure API to access multiple genomic resources
Clojure
3
star
13

bcbio.run

Idempotent, transactional runs of external command line programs
Clojure
3
star
14

bcbio.variation.plus

Extended functionality for analyzing genomic variability, built on bcbio.variation and GATK
Clojure
3
star
15

zmk-34key-split

3
star
16

bcbio.adam

Experiment: Clojure interface to ADAM distributed file formats for variants and aligned reads
Clojure
2
star
17

kwd-doc-find

Clojure web server providing full-text document searching via Lucene
Clojure
2
star
18

chapmanb.github.com

1
star
19

bcbio.coverage

Investigate coverage metrics for variant calling experiments
Clojure
1
star