chapmanb/bcbio.coverage

Stars
1
Language
Clojure
Created over 11 years ago
Updated over 11 years ago

chapmanb/bcbio.coverage

chapmanb

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Investigate coverage metrics for variant calling experiments

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

homebrew-cbl

Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science

biosqlweb

clj-blend

Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j

bcbio.prioritize

Prioritize small variants, structural variants and coverage based on biological inputs

r-var

Exploring our genomic variability

bcbio-conda

Deprecated conda recipes for bcbio python code and dependencies -- migrated to bioconda

dotfiles

~chapmanb dotfile organization for backup and sychronization

bcbio.pipeline

Next-generation sequencing analysis pipelines built on Hadoop and Cascalog

clj-gcon

Genome Connector: Clojure API to access multiple genomic resources

bcbio.run

Idempotent, transactional runs of external command line programs

bcbio.variation.plus

Extended functionality for analyzing genomic variability, built on bcbio.variation and GATK

zmk-34key-split

bcbio.adam

Experiment: Clojure interface to ADAM distributed file formats for variants and aligned reads

kwd-doc-find

Clojure web server providing full-text document searching via Lucene

mgh_projects

In-progress code for various research projects

chapmanb.github.com