Brad Chapman (@chapmanb)
github

chapmanb

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  • Stars
    star
    1,031
  • Global Rank 28,632 (Top 2 %)
  • Followers 934
  • Following 78
  • Registered over 15 years ago
  • Most used languages
    Clojure
         55.6 %
    Python
         27.8 %
    Java
         5.6 %
    Ruby
         5.6 %
    Shell
         5.6 %
  • Location 🇺🇸 United States
  • Country Total Rank 8,565
  • Country Ranking
    Clojure
         260
    Python
         1,635
    Ruby
         5,732

Top repositories

1

bcbb

Incubator for useful bioinformatics code, primarily in Python and R
Python
582
star
2

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
Python
253
star
3

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure
Clojure
67
star
4

homebrew-cbl

Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science
Ruby
19
star
5

biosqlweb

BioSQL web
Python
13
star
6

clj-blend

Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j
Clojure
10
star
7

bcbio.prioritize

Prioritize small variants, structural variants and coverage based on biological inputs
Clojure
7
star
8

r-var

Exploring our genomic variability
Clojure
7
star
9

bcbio-conda

Deprecated conda recipes for bcbio python code and dependencies -- migrated to bioconda
Python
7
star
10

bcbio.pipeline

Next-generation sequencing analysis pipelines built on Hadoop and Cascalog
Java
4
star
11

clj-gcon

Genome Connector: Clojure API to access multiple genomic resources
Clojure
3
star
12

bcbio.run

Idempotent, transactional runs of external command line programs
Clojure
3
star
13

dotfiles

~chapmanb dotfile organization for backup and sychronization
Shell
3
star
14

bcbio.variation.plus

Extended functionality for analyzing genomic variability, built on bcbio.variation and GATK
Clojure
3
star
15

bcbio.adam

Experiment: Clojure interface to ADAM distributed file formats for variants and aligned reads
Clojure
2
star
16

zmk-34key-split

2
star
17

kwd-doc-find

Clojure web server providing full-text document searching via Lucene
Clojure
2
star
18

mgh_projects

In-progress code for various research projects
Python
2
star
19

chapmanb.github.com

1
star
20

bcbio.coverage

Investigate coverage metrics for variant calling experiments
Clojure
1
star