Discover @chapmanb Open Source projects

Brad Chapman (@chapmanb)

chapmanb

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Registered almost 16 years ago
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Clojure
55.6 %

Python
27.8 %

Shell
5.6 %

Java
5.6 %

Ruby
5.6 %
Location 🇺🇸 United States
Country Total Rank 8,565
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Clojure
260

Python
1,691

Ruby
5,698

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

homebrew-cbl

Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science

biosqlweb

clj-blend

Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j

bcbio.prioritize

Prioritize small variants, structural variants and coverage based on biological inputs

r-var

Exploring our genomic variability

bcbio-conda

Deprecated conda recipes for bcbio python code and dependencies -- migrated to bioconda

dotfiles

~chapmanb dotfile organization for backup and sychronization

bcbio.pipeline

Next-generation sequencing analysis pipelines built on Hadoop and Cascalog

clj-gcon

Genome Connector: Clojure API to access multiple genomic resources

bcbio.run

Idempotent, transactional runs of external command line programs

bcbio.variation.plus

Extended functionality for analyzing genomic variability, built on bcbio.variation and GATK

zmk-34key-split

bcbio.adam

Experiment: Clojure interface to ADAM distributed file formats for variants and aligned reads

kwd-doc-find

Clojure web server providing full-text document searching via Lucene

mgh_projects

In-progress code for various research projects

chapmanb.github.com

bcbio.coverage

Investigate coverage metrics for variant calling experiments