chapmanb/bcbio.pipeline

Stars
4
Rank 3,304,323 (Top 66 %)
Language
Java
Created almost 13 years ago
Updated over 12 years ago

chapmanb/bcbio.pipeline

chapmanb

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Next-generation sequencing analysis pipelines built on Hadoop and Cascalog

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

homebrew-cbl

Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science

biosqlweb

clj-blend

Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j

bcbio.prioritize

Prioritize small variants, structural variants and coverage based on biological inputs

r-var

Exploring our genomic variability

bcbio-conda

Deprecated conda recipes for bcbio python code and dependencies -- migrated to bioconda

dotfiles

~chapmanb dotfile organization for backup and sychronization

clj-gcon

Genome Connector: Clojure API to access multiple genomic resources

bcbio.run

Idempotent, transactional runs of external command line programs

bcbio.variation.plus

Extended functionality for analyzing genomic variability, built on bcbio.variation and GATK

zmk-34key-split

bcbio.adam

Experiment: Clojure interface to ADAM distributed file formats for variants and aligned reads

kwd-doc-find

Clojure web server providing full-text document searching via Lucene

mgh_projects

In-progress code for various research projects

chapmanb.github.com

bcbio.coverage

Investigate coverage metrics for variant calling experiments