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bcbb
Incubator for useful bioinformatics code, primarily in Python and Rcloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analysesbcbio.variation
Toolkit to analyze genomic variation data, built on the GATK with Clojurehomebrew-cbl
Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-sciencebiosqlweb
BioSQL webclj-blend
Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4jbcbio.prioritize
Prioritize small variants, structural variants and coverage based on biological inputsr-var
Exploring our genomic variabilitybcbio-conda
Deprecated conda recipes for bcbio python code and dependencies -- migrated to biocondabcbio.pipeline
Next-generation sequencing analysis pipelines built on Hadoop and Cascalogclj-gcon
Genome Connector: Clojure API to access multiple genomic resourcesbcbio.run
Idempotent, transactional runs of external command line programsbcbio.variation.plus
Extended functionality for analyzing genomic variability, built on bcbio.variation and GATKzmk-34key-split
bcbio.adam
Experiment: Clojure interface to ADAM distributed file formats for variants and aligned readskwd-doc-find
Clojure web server providing full-text document searching via Lucenemgh_projects
In-progress code for various research projectschapmanb.github.com
bcbio.coverage
Investigate coverage metrics for variant calling experimentsLove Open Source and this site? Check out how you can help us