bigbio/pgt-pangenome bigbio/pgt-pangenome

  • Stars
    star
    1
  • Language
    Jupyter Notebook
  • License
    BSD 2-Clause "Sim...
  • Created about 1 year ago
  • Updated 6 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
bigbio/pgt-pangenome
github

bigbio

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Protegenomics analysis based on Pangenome references

More Repositories

1

proteomics-sample-metadata

The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
78
star
2

sdrf-pipelines

A repository to convert SDRF proteomics files into pipelines config files
Python
16
star
3

nf-workflows

Repository of Nextflow+BioContainers workflows
Nextflow
14
star
4

DLEAMSE

A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring
Python
11
star
5

pIR

Estimation of isoelectric point of peptides and proteins using Support vector machines
R
10
star
6

py-pgatk

Python tools for proteogenomics analysis toolkit
Python
10
star
7

pmultiqc

A library for QC report based on MultiQC framework
Python
9
star
8

quantms.io

The proteomics quantification format, extending mzTab for large scale datasets.
Python
7
star
9

pgatk

PGATK: ProteoGenomics Analysis ToolKit
6
star
10

ibaqpy

Absolute quantification package based on MSsstats output and Quantms
Python
5
star
11

pquant

R package for protemics downstream a analysis
R
4
star
12

qccalculator

Development for python driven QC calculation (QCCalculator)
HTML
3
star
13

sparkms

Spark package to perform downstream analysis of big data proteomics
Python
3
star
14

pepgenome

Proteogenomics tool that enables to map peptides to genome coordinates
Java
3
star
15

pgdb

ProteomeGenomics Database Creation - Nextflow Pipeline
Nextflow
2
star
16

mztabpy

Python library to handle mzTab files
Python
2
star
17

pgatk-io

High performance io library for proteogenomics
Java
1
star
18

mzqc-pylib

The python implementation to mzqc
Jupyter Notebook
1
star
19

proteomicstmt

nf-core pipeline for proteomics TMT analysis
Nextflow
1
star
20

proma

PROMA: PROteomics Metadata Annotator
HTML
1
star
21

jmzTab

Version of jmzTab library
Java
1
star
22

fslite

Lightweight Feature selection Python library
Python
1
star
23

spectrafuse

Incremental clustesting pipeline from quantms data.
Python
1
star
24

submission-tool-validator

A command-line tool that provide functionalities to validate files that can be submitted to PRIDE
Java
1
star