bigbio/pquant bigbio/pquant

  • This repository has been archived on 07/Jan/2024
  • Stars
    star
    4
  • Rank 3,287,297 (Top 66 %)
  • Language
    R
  • License
    GNU General Publi...
  • Created almost 4 years ago
  • Updated over 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
bigbio/pquant
github

bigbio

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

R package for protemics downstream a analysis

More Repositories

1

proteomics-sample-metadata

The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
76
star
2

sdrf-pipelines

A repository to convert SDRF proteomics files into pipelines config files
Python
16
star
3

nf-workflows

Repository of Nextflow+BioContainers workflows
Nextflow
14
star
4

DLEAMSE

A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring
Python
11
star
5

pIR

Estimation of isoelectric point of peptides and proteins using Support vector machines
R
10
star
6

py-pgatk

Python tools for proteogenomics analysis toolkit
Python
10
star
7

pmultiqc

A library for QC report based on MultiQC framework
Python
9
star
8

pgatk

PGATK: ProteoGenomics Analysis ToolKit
6
star
9

ibaqpy

Absolute quantification package based on MSsstats output and Quantms
Python
5
star
10

quantms.io

The proteomics quantification format, extending mzTab for large scale datasets.
Python
5
star
11

qccalculator

Development for python driven QC calculation (QCCalculator)
HTML
3
star
12

sparkms

Spark package to perform downstream analysis of big data proteomics
Python
3
star
13

pepgenome

Proteogenomics tool that enables to map peptides to genome coordinates
Java
3
star
14

pgdb

ProteomeGenomics Database Creation - Nextflow Pipeline
Nextflow
2
star
15

mztabpy

Python library to handle mzTab files
Python
2
star
16

pgatk-io

High performance io library for proteogenomics
Java
1
star
17

mzqc-pylib

The python implementation to mzqc
Jupyter Notebook
1
star
18

proteomicstmt

nf-core pipeline for proteomics TMT analysis
Nextflow
1
star
19

proma

PROMA: PROteomics Metadata Annotator
HTML
1
star
20

jmzTab

Version of jmzTab library
Java
1
star
21

fsspark

Spark library for feature selection in multiomics using
Python
1
star
22

spectrafuse

Incremental clustesting pipeline from quantms data.
Python
1
star
23

submission-tool-validator

A command-line tool that provide functionalities to validate files that can be submitted to PRIDE
Java
1
star
24

pgt-pangenome

Protegenomics analysis based on Pangenome references
Jupyter Notebook
1
star