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proteomics-sample-metadata
The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasetssdrf-pipelines
A repository to convert SDRF proteomics files into pipelines config filesnf-workflows
Repository of Nextflow+BioContainers workflowsDLEAMSE
A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoringpIR
Estimation of isoelectric point of peptides and proteins using Support vector machinespy-pgatk
Python tools for proteogenomics analysis toolkitpmultiqc
A library for QC report based on MultiQC frameworkquantms.io
The proteomics quantification format, extending mzTab for large scale datasets.pgatk
PGATK: ProteoGenomics Analysis ToolKitibaqpy
Absolute quantification package based on MSsstats output and Quantmspquant
R package for protemics downstream a analysisqccalculator
Development for python driven QC calculation (QCCalculator)sparkms
Spark package to perform downstream analysis of big data proteomicspgdb
ProteomeGenomics Database Creation - Nextflow Pipelinemztabpy
Python library to handle mzTab filespgatk-io
High performance io library for proteogenomicsmzqc-pylib
The python implementation to mzqcproteomicstmt
nf-core pipeline for proteomics TMT analysisproma
PROMA: PROteomics Metadata AnnotatorjmzTab
Version of jmzTab libraryfslite
Lightweight Feature selection Python libraryspectrafuse
Incremental clustesting pipeline from quantms data.submission-tool-validator
A command-line tool that provide functionalities to validate files that can be submitted to PRIDEpgt-pangenome
Protegenomics analysis based on Pangenome referencesLove Open Source and this site? Check out how you can help us