BigBio Stack (@bigbio)
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Top repositories

1

proteomics-sample-metadata

The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
78
star
2

sdrf-pipelines

A repository to convert SDRF proteomics files into pipelines config files
Python
16
star
3

nf-workflows

Repository of Nextflow+BioContainers workflows
Nextflow
14
star
4

DLEAMSE

A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring
Python
11
star
5

pIR

Estimation of isoelectric point of peptides and proteins using Support vector machines
R
10
star
6

py-pgatk

Python tools for proteogenomics analysis toolkit
Python
10
star
7

pmultiqc

A library for QC report based on MultiQC framework
Python
9
star
8

quantms.io

The proteomics quantification format, extending mzTab for large scale datasets.
Python
7
star
9

pgatk

PGATK: ProteoGenomics Analysis ToolKit
6
star
10

ibaqpy

Absolute quantification package based on MSsstats output and Quantms
Python
5
star
11

pquant

R package for protemics downstream a analysis
R
4
star
12

qccalculator

Development for python driven QC calculation (QCCalculator)
HTML
3
star
13

sparkms

Spark package to perform downstream analysis of big data proteomics
Python
3
star
14

pepgenome

Proteogenomics tool that enables to map peptides to genome coordinates
Java
3
star
15

pgdb

ProteomeGenomics Database Creation - Nextflow Pipeline
Nextflow
2
star
16

mztabpy

Python library to handle mzTab files
Python
2
star
17

pgatk-io

High performance io library for proteogenomics
Java
1
star
18

mzqc-pylib

The python implementation to mzqc
Jupyter Notebook
1
star
19

proteomicstmt

nf-core pipeline for proteomics TMT analysis
Nextflow
1
star
20

proma

PROMA: PROteomics Metadata Annotator
HTML
1
star
21

jmzTab

Version of jmzTab library
Java
1
star
22

fslite

Lightweight Feature selection Python library
Python
1
star
23

spectrafuse

Incremental clustesting pipeline from quantms data.
Python
1
star
24

submission-tool-validator

A command-line tool that provide functionalities to validate files that can be submitted to PRIDE
Java
1
star
25

pgt-pangenome

Protegenomics analysis based on Pangenome references
Jupyter Notebook
1
star