bigbio/mzqc-pylib

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Created almost 5 years ago

bigbio/mzqc-pylib

bigbio

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The python implementation to mzqc

proteomics-sample-metadata

The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

sdrf-pipelines

A repository to convert SDRF proteomics files into pipelines config files

nf-workflows

Repository of Nextflow+BioContainers workflows

DLEAMSE

A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring

pIR

Estimation of isoelectric point of peptides and proteins using Support vector machines

py-pgatk

Python tools for proteogenomics analysis toolkit

pmultiqc

A library for QC report based on MultiQC framework

quantms.io

The proteomics quantification format, extending mzTab for large scale datasets.

pgatk

PGATK: ProteoGenomics Analysis ToolKit

ibaqpy

Absolute quantification package based on MSsstats output and Quantms

pquant

R package for protemics downstream a analysis

qccalculator

Development for python driven QC calculation (QCCalculator)

sparkms

Spark package to perform downstream analysis of big data proteomics

pepgenome

Proteogenomics tool that enables to map peptides to genome coordinates

pgdb

ProteomeGenomics Database Creation - Nextflow Pipeline

mztabpy

Python library to handle mzTab files

pgatk-io

High performance io library for proteogenomics

proteomicstmt

nf-core pipeline for proteomics TMT analysis

proma

PROMA: PROteomics Metadata Annotator

jmzTab

Version of jmzTab library

fslite

Lightweight Feature selection Python library

spectrafuse

Incremental clustesting pipeline from quantms data.

submission-tool-validator

A command-line tool that provide functionalities to validate files that can be submitted to PRIDE

pgt-pangenome

Protegenomics analysis based on Pangenome references

Jupyter Notebook