Discover YuLab-SMU/misc Open Source project

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YuLab-SMU

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clusterProfiler

📊 A universal enrichment tool for interpreting omics data

933

ggtree

🎄Visualization and annotation of phylogenetic trees

794

enrichplot

Visualization of Functional Enrichment Result

213

ChIPseeker

🎯 ChIP peak Annotation, Comparison and Visualization

204

ggmsa

🚥 Visualizing publication-quality multiple sequence alignment using ggplot2

189

MicrobiotaProcess

🦠 A comprehensive R package for deep mining microbiome

156

ggbreak

💔 An implementation of scale functions for setting axis breaks of a 'gg' plot.

112

DOSE

😷 Disease Ontology Semantic and Enrichment analysis

105

treedata-book

📚 a complete reference book for treeio, tidytree and ggtree packages

TeX

treeio

🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

aplot

Decorate a plot with associated information

ggtreeExtra

🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

biomedical-knowledge-mining-book

📚 Biomedical knowledge mining using GOSemSim and clusterProfiler

TeX

createKEGGdb

Create KEGG.db Package

GOSemSim

⛳ GO-terms Semantic Similarity Measures

plotbb

🖌️ Grammar of Graphics for base plot

tidytree

🚿A Tidy Tool for Phylogenetic Tree Data Manipulation

ReactomePA

Reactome Pathway Analysis

fanyi

Translate Words or Sentences via Online Translators

ProjectYulab

⏭️ Small coding tasks that enable you to participate in our development

MicrobiomeProfiler

🦠 A shiny package for microbiome functional enrichment analysis

ggsc

🧠 Visualizing Single Cell and Spatial Transcriptomics

yulab.utils

Miscellaneous functions commonly used by 'YuLab-SMU'.

plotting-tree-with-data-using-ggtreeExtra

TeX

treedataverse

Meta package for processing and visualizing tree with data

GeoTcgaData

Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA

seqcombo

Visualization tool for genetic reassortment

nCov2019

🦠 Exploring COVID-19 data

wget

download files in R using wget -c

survival-guide

YuLab的生存秘笈

ggfun

useful functions for ggplot

TDbook

A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"

tidydr

clusterProfiler-book

a complete reference book for clusterProfiler and its sub-packages

TeX

MMINP

Microbe-Metabolite INteractions-based metabolic profiles Predictor

clusterProfiler.dplyr

dplyr verbs for clusterProfiler outputs

yulab-smu.github.io

🏠 Homepage for YuLab-SMU

HTML

ggtreeDendro

Drawing 'dendrogram' using 'ggtree'

MicrobiotaProcessWorkshop

The workshop of microbiome datasets analysis using MicrobiotaProcess

Makefile

meshes

🩺 MeSH Enrichment and Semantic analyses

shinyTempSignal

Explore Temporal and Other Phylogenetic Signals

aplotExtra

Creating composite plot using 'aplot'

iggtree

interactive tree viewer using ggtree + shiny

seqmagick

sequence manipulation

supplemental-clusterProfiler-v4

TeX

supplemental-ggbreak

TeX

HDO.db

A new version of DO.db

BMplot

Base Modification Visualization

MP_supplementary_file

msacolor

simpleGO

Simple GO Enrichment Analysis

ggcircos

ggmsaBioWorkshop2021

Dockerfile

tigeR

🐯 Tumor Immunotherapy Gene Expression Resource

ggtreeSpace

multiEnrichment

multi-omic enrichment analysis

wikiprofiler

SVP

gson

lab_dot_files

Vim Script

MPO.db

mh_analysis

ChIPseeker_current_protocols

gson-files

HTML

COSemSim

An R package measures semantic similarity value for cell types, genes and proteins

ggacmap

plotting acmap using ggplot2

HPO.db

clusterProfiler_protocol

omics data analysis using clusterProfiler ;)

supplemental-ggmsa

YuLab-SMU/misc

YuLab-SMU

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