• Stars
    star
    8
  • Rank 2,088,724 (Top 42 %)
  • Language
    R
  • Created about 6 years ago
  • Updated 26 days ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

To help select CRAN and Bioconductor mirrors.

More Repositories

1

clusterProfiler

📊 A universal enrichment tool for interpreting omics data
R
1,004
star
2

ggtree

🎄Visualization and annotation of phylogenetic trees
R
834
star
3

enrichplot

Visualization of Functional Enrichment Result
R
226
star
4

ChIPseeker

🎯 ChIP peak Annotation, Comparison and Visualization
R
220
star
5

ggmsa

🚥 Visualizing publication-quality multiple sequence alignment using ggplot2
R
199
star
6

MicrobiotaProcess

🦠 A comprehensive R package for deep mining microbiome
R
177
star
7

ggbreak

💔 An implementation of scale functions for setting axis breaks of a 'gg' plot.
R
116
star
8

DOSE

😷 Disease Ontology Semantic and Enrichment analysis
R
114
star
9

treedata-book

📚 a complete reference book for treeio, tidytree and ggtree packages
TeX
100
star
10

aplot

Decorate a plot with associated information
R
97
star
11

treeio

🌱 Base Classes and Functions for Phylogenetic Tree Input and Output
R
94
star
12

ggtreeExtra

🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
R
86
star
13

biomedical-knowledge-mining-book

📚 Biomedical knowledge mining using GOSemSim and clusterProfiler
TeX
69
star
14

scatterpie

🎨 scatter pie plot
R
60
star
15

createKEGGdb

Create KEGG.db Package
R
58
star
16

GOSemSim

⛳ GO-terms Semantic Similarity Measures
R
58
star
17

plotbb

🖌️ Grammar of Graphics for base plot
R
52
star
18

tidytree

🚿A Tidy Tool for Phylogenetic Tree Data Manipulation
R
51
star
19

ggsc

🧠 Visualizing Single Cell and Spatial Transcriptomics
R
40
star
20

fanyi

Translate Words or Sentences via Online Translators
R
39
star
21

ReactomePA

Reactome Pathway Analysis
R
37
star
22

MicrobiomeProfiler

🦠 A shiny package for microbiome functional enrichment analysis
R
36
star
23

ProjectYulab

⏭️ Small coding tasks that enable you to participate in our development
34
star
24

yulab.utils

Miscellaneous functions commonly used by 'YuLab-SMU'.
R
30
star
25

treedataverse

Meta package for processing and visualizing tree with data
R
27
star
26

plotting-tree-with-data-using-ggtreeExtra

TeX
24
star
27

tigeR

🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
R
24
star
28

GeoTcgaData

Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA
R
22
star
29

seqcombo

Visualization tool for genetic reassortment
R
21
star
30

nCov2019

🦠 Exploring COVID-19 data
R
19
star
31

wget

download files in R using wget -c
R
17
star
32

survival-guide

YuLab的生存秘笈
16
star
33

ggfun

useful functions for ggplot
R
16
star
34

clusterProfiler.dplyr

dplyr verbs for clusterProfiler outputs
R
13
star
35

TDbook

A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"
R
13
star
36

tidydr

R
13
star
37

yulab-smu.github.io

🏠 Homepage for YuLab-SMU
HTML
13
star
38

MMINP

Microbe-Metabolite INteractions-based metabolic profiles Predictor
R
13
star
39

clusterProfiler-book

a complete reference book for clusterProfiler and its sub-packages
TeX
13
star
40

meshes

🩺 MeSH Enrichment and Semantic analyses
R
11
star
41

ggtreeDendro

Drawing 'dendrogram' using 'ggtree'
R
11
star
42

MicrobiotaProcessWorkshop

The workshop of microbiome datasets analysis using MicrobiotaProcess
Makefile
9
star
43

shinyTempSignal

Explore Temporal and Other Phylogenetic Signals
R
9
star
44

clusterProfiler_protocol

omics data analysis using clusterProfiler ;)
R
9
star
45

ggflow

Draw flow chart based on ggtree
R
8
star
46

aplotExtra

Creating composite plot using 'aplot'
R
8
star
47

rdpvis

Visualizing sequence break point
R
7
star
48

sc2p

single cell to pathway
R
6
star
49

iggtree

interactive tree viewer using ggtree + shiny
R
6
star
50

seqmagick

sequence manipulation
R
6
star
51

supplemental-clusterProfiler-v4

TeX
5
star
52

wikiprofiler

R
5
star
53

supplemental-ggbreak

TeX
5
star
54

SVP

R
5
star
55

msacolor

R
4
star
56

HDO.db

A new version of DO.db
R
4
star
57

simpleGO

Simple GO Enrichment Analysis
R
4
star
58

BMplot

Base Modification Visualization
R
4
star
59

MP_supplementary_file

R
4
star
60

ggcircos

R
4
star
61

ggtreeSpace

🕸️Exploring phylomorphospace using 'ggtree'
R
4
star
62

misc

3
star
63

ggmsaBioWorkshop2021

Dockerfile
3
star
64

learnggtree

Tutorial for Learning 'ggtree'
Makefile
3
star
65

multiEnrichment

multi-omic enrichment analysis
R
3
star
66

gson

R
2
star
67

lab_dot_files

Vim Script
2
star
68

sclet

R
1
star
69

MPO.db

R
1
star
70

mh_analysis

R
1
star
71

ChIPseeker_current_protocols

1
star
72

gson-files

HTML
1
star
73

ggacmap

plotting acmap using ggplot2
R
1
star
74

HPO.db

R
1
star
75

COSemSim

An R package measures semantic similarity value for cell types, genes and proteins
R
1
star
76

supplemental-ggmsa

R
1
star
77

ggtangle

Draw Network with Data
R
1
star