YuLab-SMU/tidydr YuLab-SMU/tidydr

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    13
  • Rank 1,512,713 (Top 30 %)
  • Language
    R
  • Created over 3 years ago
  • Updated 10 months ago
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YuLab-SMU/tidydr
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YuLab-SMU

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Repository Details

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๐Ÿฆ  A comprehensive R package for deep mining microbiome
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ggbreak

๐Ÿ’” An implementation of scale functions for setting axis breaks of a 'gg' plot.
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DOSE

๐Ÿ˜ท Disease Ontology Semantic and Enrichment analysis
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9

treedata-book

๐Ÿ“š a complete reference book for treeio, tidytree and ggtree packages
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aplot

Decorate a plot with associated information
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11

treeio

๐ŸŒฑ Base Classes and Functions for Phylogenetic Tree Input and Output
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ggtreeExtra

๐Ÿ‹ Add Geom Layers On Circular Or Other Layout Tree Of โ€œggtreeโ€
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๐Ÿ“š Biomedical knowledge mining using GOSemSim and clusterProfiler
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scatterpie

๐ŸŽจ scatter pie plot
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createKEGGdb

Create KEGG.db Package
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GOSemSim

โ›ณ GO-terms Semantic Similarity Measures
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plotbb

๐Ÿ–Œ๏ธ Grammar of Graphics for base plot
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tidytree

๐ŸšฟA Tidy Tool for Phylogenetic Tree Data Manipulation
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19

fanyi

Translate Words or Sentences via Online Translators
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ggsc

๐Ÿง  Visualizing Single Cell and Spatial Transcriptomics
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ReactomePA

Reactome Pathway Analysis
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MicrobiomeProfiler

๐Ÿฆ  A shiny package for microbiome functional enrichment analysis
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ProjectYulab

โญ๏ธ Small coding tasks that enable you to participate in our development
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yulab.utils

Miscellaneous functions commonly used by 'YuLab-SMU'.
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treedataverse

Meta package for processing and visualizing tree with data
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plotting-tree-with-data-using-ggtreeExtra

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tigeR

๐Ÿฏ tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
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GeoTcgaData

Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA
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seqcombo

Visualization tool for genetic reassortment
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nCov2019

๐Ÿฆ  Exploring COVID-19 data
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31

ggfun

useful functions for ggplot
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32

wget

download files in R using wget -c
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survival-guide

YuLab็š„็”Ÿๅญ˜็ง˜็ฌˆ
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clusterProfiler.dplyr

dplyr verbs for clusterProfiler outputs
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35

TDbook

A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"
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MMINP

Microbe-Metabolite INteractions-based metabolic profiles Predictor
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clusterProfiler-book

a complete reference book for clusterProfiler and its sub-packages
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ggtreeDendro

Drawing 'dendrogram' using 'ggtree'
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39

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๐Ÿ  Homepage for YuLab-SMU
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40

meshes

๐Ÿฉบ MeSH Enrichment and Semantic analyses
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41

clusterProfiler_protocol

omics data analysis using clusterProfiler ;)
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42

MicrobiotaProcessWorkshop

The workshop of microbiome datasets analysis using MicrobiotaProcess
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shinyTempSignal

Explore Temporal and Other Phylogenetic Signals
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44

ggflow

Draw flow chart based on ggtree
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45

mirrorselect

To help select CRAN and Bioconductor mirrors.
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46

aplotExtra

Creating composite plot using 'aplot'
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47

rdpvis

Visualizing sequence break point
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48

sc2p

single cell to pathway
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49

iggtree

interactive tree viewer using ggtree + shiny
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50

learnggtree

Tutorial for Learning 'ggtree'
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51

seqmagick

sequence manipulation
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52

supplemental-clusterProfiler-v4

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53

ggtreeSpace

๐Ÿ•ธ๏ธExploring phylomorphospace using 'ggtree'
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54

wikiprofiler

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55

supplemental-ggbreak

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SVP

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57

msacolor

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58

HDO.db

A new version of DO.db
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59

simpleGO

Simple GO Enrichment Analysis
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BMplot

Base Modification Visualization
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61

MP_supplementary_file

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62

ggcircos

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63

misc

3
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64

ggmsaBioWorkshop2021

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65

multiEnrichment

multi-omic enrichment analysis
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66

ggtangle

Draw Network with Data
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67

gson

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68

lab_dot_files

Vim Script
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69

sclet

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70

MPO.db

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71

mh_analysis

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72

ChIPseeker_current_protocols

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73

gson-files

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74

ggacmap

plotting acmap using ggplot2
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75

HPO.db

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76

COSemSim

An R package measures semantic similarity value for cell types, genes and proteins
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supplemental-ggmsa

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