YuLab-SMU/COSemSim YuLab-SMU/COSemSim

  • Stars
    star
    1
  • Language
    R
  • Created over 3 years ago
  • Updated over 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
YuLab-SMU/COSemSim
github

YuLab-SMU

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

An R package measures semantic similarity value for cell types, genes and proteins

More Repositories

1

clusterProfiler

๐Ÿ“Š A universal enrichment tool for interpreting omics data
R
1,004
star
2

ggtree

๐ŸŽ„Visualization and annotation of phylogenetic trees
R
834
star
3

enrichplot

Visualization of Functional Enrichment Result
R
226
star
4

ChIPseeker

๐ŸŽฏ ChIP peak Annotation, Comparison and Visualization
R
220
star
5

ggmsa

๐Ÿšฅ Visualizing publication-quality multiple sequence alignment using ggplot2
R
200
star
6

MicrobiotaProcess

๐Ÿฆ  A comprehensive R package for deep mining microbiome
R
178
star
7

ggbreak

๐Ÿ’” An implementation of scale functions for setting axis breaks of a 'gg' plot.
R
127
star
8

DOSE

๐Ÿ˜ท Disease Ontology Semantic and Enrichment analysis
R
114
star
9

treedata-book

๐Ÿ“š a complete reference book for treeio, tidytree and ggtree packages
TeX
100
star
10

aplot

Decorate a plot with associated information
R
97
star
11

treeio

๐ŸŒฑ Base Classes and Functions for Phylogenetic Tree Input and Output
R
94
star
12

ggtreeExtra

๐Ÿ‹ Add Geom Layers On Circular Or Other Layout Tree Of โ€œggtreeโ€
R
86
star
13

biomedical-knowledge-mining-book

๐Ÿ“š Biomedical knowledge mining using GOSemSim and clusterProfiler
TeX
69
star
14

scatterpie

๐ŸŽจ scatter pie plot
R
60
star
15

createKEGGdb

Create KEGG.db Package
R
58
star
16

GOSemSim

โ›ณ GO-terms Semantic Similarity Measures
R
58
star
17

plotbb

๐Ÿ–Œ๏ธ Grammar of Graphics for base plot
R
52
star
18

tidytree

๐ŸšฟA Tidy Tool for Phylogenetic Tree Data Manipulation
R
51
star
19

fanyi

Translate Words or Sentences via Online Translators
R
44
star
20

ggsc

๐Ÿง  Visualizing Single Cell and Spatial Transcriptomics
R
40
star
21

ReactomePA

Reactome Pathway Analysis
R
37
star
22

MicrobiomeProfiler

๐Ÿฆ  A shiny package for microbiome functional enrichment analysis
R
36
star
23

ProjectYulab

โญ๏ธ Small coding tasks that enable you to participate in our development
33
star
24

yulab.utils

Miscellaneous functions commonly used by 'YuLab-SMU'.
R
30
star
25

treedataverse

Meta package for processing and visualizing tree with data
R
27
star
26

plotting-tree-with-data-using-ggtreeExtra

TeX
24
star
27

tigeR

๐Ÿฏ tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
R
24
star
28

GeoTcgaData

Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA
R
22
star
29

seqcombo

Visualization tool for genetic reassortment
R
21
star
30

nCov2019

๐Ÿฆ  Exploring COVID-19 data
R
19
star
31

ggfun

useful functions for ggplot
R
18
star
32

wget

download files in R using wget -c
R
17
star
33

survival-guide

YuLab็š„็”Ÿๅญ˜็ง˜็ฌˆ
16
star
34

clusterProfiler.dplyr

dplyr verbs for clusterProfiler outputs
R
13
star
35

TDbook

A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"
R
13
star
36

tidydr

R
13
star
37

MMINP

Microbe-Metabolite INteractions-based metabolic profiles Predictor
R
13
star
38

clusterProfiler-book

a complete reference book for clusterProfiler and its sub-packages
TeX
13
star
39

ggtreeDendro

Drawing 'dendrogram' using 'ggtree'
R
12
star
40

yulab-smu.github.io

๐Ÿ  Homepage for YuLab-SMU
HTML
12
star
41

meshes

๐Ÿฉบ MeSH Enrichment and Semantic analyses
R
11
star
42

clusterProfiler_protocol

omics data analysis using clusterProfiler ;)
R
10
star
43

MicrobiotaProcessWorkshop

The workshop of microbiome datasets analysis using MicrobiotaProcess
Makefile
9
star
44

shinyTempSignal

Explore Temporal and Other Phylogenetic Signals
R
9
star
45

ggflow

Draw flow chart based on ggtree
R
8
star
46

mirrorselect

To help select CRAN and Bioconductor mirrors.
R
8
star
47

aplotExtra

Creating composite plot using 'aplot'
R
8
star
48

rdpvis

Visualizing sequence break point
R
7
star
49

sc2p

single cell to pathway
R
6
star
50

iggtree

interactive tree viewer using ggtree + shiny
R
6
star
51

learnggtree

Tutorial for Learning 'ggtree'
Makefile
6
star
52

seqmagick

sequence manipulation
R
6
star
53

supplemental-clusterProfiler-v4

TeX
5
star
54

ggtreeSpace

๐Ÿ•ธ๏ธExploring phylomorphospace using 'ggtree'
R
5
star
55

wikiprofiler

R
5
star
56

supplemental-ggbreak

TeX
5
star
57

SVP

R
5
star
58

msacolor

R
4
star
59

HDO.db

A new version of DO.db
R
4
star
60

simpleGO

Simple GO Enrichment Analysis
R
4
star
61

BMplot

Base Modification Visualization
R
4
star
62

MP_supplementary_file

R
4
star
63

ggcircos

R
4
star
64

misc

3
star
65

ggmsaBioWorkshop2021

Dockerfile
3
star
66

multiEnrichment

multi-omic enrichment analysis
R
3
star
67

ggtangle

Draw Network with Data
R
3
star
68

gson

R
2
star
69

lab_dot_files

Vim Script
2
star
70

sclet

R
1
star
71

MPO.db

R
1
star
72

mh_analysis

R
1
star
73

ChIPseeker_current_protocols

1
star
74

gson-files

HTML
1
star
75

ggacmap

plotting acmap using ggplot2
R
1
star
76

HPO.db

R
1
star
77

supplemental-ggmsa

R
1
star