• Stars
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    97
  • Rank 348,505 (Top 7 %)
  • Language
    R
  • Created over 4 years ago
  • Updated 3 months ago

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Repository Details

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More Repositories

1

clusterProfiler

๐Ÿ“Š A universal enrichment tool for interpreting omics data
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1,004
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2

ggtree

๐ŸŽ„Visualization and annotation of phylogenetic trees
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834
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3

enrichplot

Visualization of Functional Enrichment Result
R
226
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4

ChIPseeker

๐ŸŽฏ ChIP peak Annotation, Comparison and Visualization
R
220
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5

ggmsa

๐Ÿšฅ Visualizing publication-quality multiple sequence alignment using ggplot2
R
200
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6

MicrobiotaProcess

๐Ÿฆ  A comprehensive R package for deep mining microbiome
R
178
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7

ggbreak

๐Ÿ’” An implementation of scale functions for setting axis breaks of a 'gg' plot.
R
127
star
8

DOSE

๐Ÿ˜ท Disease Ontology Semantic and Enrichment analysis
R
114
star
9

treedata-book

๐Ÿ“š a complete reference book for treeio, tidytree and ggtree packages
TeX
100
star
10

treeio

๐ŸŒฑ Base Classes and Functions for Phylogenetic Tree Input and Output
R
94
star
11

ggtreeExtra

๐Ÿ‹ Add Geom Layers On Circular Or Other Layout Tree Of โ€œggtreeโ€
R
86
star
12

biomedical-knowledge-mining-book

๐Ÿ“š Biomedical knowledge mining using GOSemSim and clusterProfiler
TeX
69
star
13

scatterpie

๐ŸŽจ scatter pie plot
R
60
star
14

createKEGGdb

Create KEGG.db Package
R
58
star
15

GOSemSim

โ›ณ GO-terms Semantic Similarity Measures
R
58
star
16

plotbb

๐Ÿ–Œ๏ธ Grammar of Graphics for base plot
R
52
star
17

tidytree

๐ŸšฟA Tidy Tool for Phylogenetic Tree Data Manipulation
R
51
star
18

fanyi

Translate Words or Sentences via Online Translators
R
44
star
19

ggsc

๐Ÿง  Visualizing Single Cell and Spatial Transcriptomics
R
40
star
20

ReactomePA

Reactome Pathway Analysis
R
37
star
21

MicrobiomeProfiler

๐Ÿฆ  A shiny package for microbiome functional enrichment analysis
R
36
star
22

ProjectYulab

โญ๏ธ Small coding tasks that enable you to participate in our development
33
star
23

yulab.utils

Miscellaneous functions commonly used by 'YuLab-SMU'.
R
30
star
24

treedataverse

Meta package for processing and visualizing tree with data
R
27
star
25

plotting-tree-with-data-using-ggtreeExtra

TeX
24
star
26

tigeR

๐Ÿฏ tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
R
24
star
27

GeoTcgaData

Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA
R
22
star
28

seqcombo

Visualization tool for genetic reassortment
R
21
star
29

nCov2019

๐Ÿฆ  Exploring COVID-19 data
R
19
star
30

ggfun

useful functions for ggplot
R
18
star
31

wget

download files in R using wget -c
R
17
star
32

survival-guide

YuLab็š„็”Ÿๅญ˜็ง˜็ฌˆ
16
star
33

clusterProfiler.dplyr

dplyr verbs for clusterProfiler outputs
R
13
star
34

TDbook

A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"
R
13
star
35

tidydr

R
13
star
36

MMINP

Microbe-Metabolite INteractions-based metabolic profiles Predictor
R
13
star
37

clusterProfiler-book

a complete reference book for clusterProfiler and its sub-packages
TeX
13
star
38

ggtreeDendro

Drawing 'dendrogram' using 'ggtree'
R
12
star
39

yulab-smu.github.io

๐Ÿ  Homepage for YuLab-SMU
HTML
12
star
40

meshes

๐Ÿฉบ MeSH Enrichment and Semantic analyses
R
11
star
41

clusterProfiler_protocol

omics data analysis using clusterProfiler ;)
R
10
star
42

MicrobiotaProcessWorkshop

The workshop of microbiome datasets analysis using MicrobiotaProcess
Makefile
9
star
43

shinyTempSignal

Explore Temporal and Other Phylogenetic Signals
R
9
star
44

ggflow

Draw flow chart based on ggtree
R
8
star
45

mirrorselect

To help select CRAN and Bioconductor mirrors.
R
8
star
46

aplotExtra

Creating composite plot using 'aplot'
R
8
star
47

rdpvis

Visualizing sequence break point
R
7
star
48

sc2p

single cell to pathway
R
6
star
49

iggtree

interactive tree viewer using ggtree + shiny
R
6
star
50

learnggtree

Tutorial for Learning 'ggtree'
Makefile
6
star
51

seqmagick

sequence manipulation
R
6
star
52

supplemental-clusterProfiler-v4

TeX
5
star
53

ggtreeSpace

๐Ÿ•ธ๏ธExploring phylomorphospace using 'ggtree'
R
5
star
54

wikiprofiler

R
5
star
55

supplemental-ggbreak

TeX
5
star
56

SVP

R
5
star
57

msacolor

R
4
star
58

HDO.db

A new version of DO.db
R
4
star
59

simpleGO

Simple GO Enrichment Analysis
R
4
star
60

BMplot

Base Modification Visualization
R
4
star
61

MP_supplementary_file

R
4
star
62

ggcircos

R
4
star
63

misc

3
star
64

ggmsaBioWorkshop2021

Dockerfile
3
star
65

multiEnrichment

multi-omic enrichment analysis
R
3
star
66

ggtangle

Draw Network with Data
R
3
star
67

gson

R
2
star
68

lab_dot_files

Vim Script
2
star
69

sclet

R
1
star
70

MPO.db

R
1
star
71

mh_analysis

R
1
star
72

ChIPseeker_current_protocols

1
star
73

gson-files

HTML
1
star
74

ggacmap

plotting acmap using ggplot2
R
1
star
75

HPO.db

R
1
star
76

COSemSim

An R package measures semantic similarity value for cell types, genes and proteins
R
1
star
77

supplemental-ggmsa

R
1
star