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Repository Details

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1

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treedata-book

๐Ÿ“š a complete reference book for treeio, tidytree and ggtree packages
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aplot

Decorate a plot with associated information
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11

treeio

๐ŸŒฑ Base Classes and Functions for Phylogenetic Tree Input and Output
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ggtreeExtra

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๐Ÿ“š Biomedical knowledge mining using GOSemSim and clusterProfiler
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๐ŸŽจ scatter pie plot
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15

createKEGGdb

Create KEGG.db Package
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GOSemSim

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17

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tidytree

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19

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Translate Words or Sentences via Online Translators
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๐Ÿง  Visualizing Single Cell and Spatial Transcriptomics
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21

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Reactome Pathway Analysis
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22

MicrobiomeProfiler

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ProjectYulab

โญ๏ธ Small coding tasks that enable you to participate in our development
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yulab.utils

Miscellaneous functions commonly used by 'YuLab-SMU'.
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treedataverse

Meta package for processing and visualizing tree with data
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plotting-tree-with-data-using-ggtreeExtra

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27

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29

seqcombo

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30

nCov2019

๐Ÿฆ  Exploring COVID-19 data
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31

ggfun

useful functions for ggplot
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32

wget

download files in R using wget -c
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33

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34

clusterProfiler.dplyr

dplyr verbs for clusterProfiler outputs
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35

TDbook

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36

tidydr

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37

MMINP

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38

clusterProfiler-book

a complete reference book for clusterProfiler and its sub-packages
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39

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40

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๐Ÿ  Homepage for YuLab-SMU
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41

meshes

๐Ÿฉบ MeSH Enrichment and Semantic analyses
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42

clusterProfiler_protocol

omics data analysis using clusterProfiler ;)
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43

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The workshop of microbiome datasets analysis using MicrobiotaProcess
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44

shinyTempSignal

Explore Temporal and Other Phylogenetic Signals
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ggflow

Draw flow chart based on ggtree
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46

mirrorselect

To help select CRAN and Bioconductor mirrors.
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aplotExtra

Creating composite plot using 'aplot'
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48

rdpvis

Visualizing sequence break point
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49

sc2p

single cell to pathway
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50

iggtree

interactive tree viewer using ggtree + shiny
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51

learnggtree

Tutorial for Learning 'ggtree'
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sequence manipulation
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53

supplemental-clusterProfiler-v4

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ggtreeSpace

๐Ÿ•ธ๏ธExploring phylomorphospace using 'ggtree'
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55

wikiprofiler

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56

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57

SVP

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58

msacolor

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59

HDO.db

A new version of DO.db
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simpleGO

Simple GO Enrichment Analysis
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BMplot

Base Modification Visualization
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62

MP_supplementary_file

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63

ggcircos

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64

misc

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65

ggmsaBioWorkshop2021

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66

multiEnrichment

multi-omic enrichment analysis
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67

ggtangle

Draw Network with Data
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gson

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69

lab_dot_files

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sclet

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71

MPO.db

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72

ChIPseeker_current_protocols

1
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73

gson-files

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74

ggacmap

plotting acmap using ggplot2
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75

HPO.db

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76

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An R package measures semantic similarity value for cell types, genes and proteins
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supplemental-ggmsa

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