MilaGraph (@DeepGraphLearning)
Guthub

DeepGraphLearning

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  • Stars
    star
    10,268
  • Global Org. Rank 2,246 (Top 0.8 %)
  • Registered about 6 years ago
  • Most used languages
    Python
         80.0 %
    C++
         6.7 %
    CSS
         6.7 %
    SCSS     6.7 %
  • Location 🇨🇦 Canada
  • Country Total Rank 94
  • Country Ranking
    Python
         23
    C++
         28
    SCSS     65
    CSS
         517

Top repositories

1

LiteratureDL4Graph

A comprehensive collection of recent papers on graph deep learning
3,056
star
2

torchdrug

A powerful and flexible machine learning platform for drug discovery
Python
1,382
star
3

graphvite

GraphVite: A General and High-performance Graph Embedding System
C++
1,185
star
4

KnowledgeGraphEmbedding

Python
1,184
star
5

RecommenderSystems

Python
1,058
star
6

GMNN

Graph Markov Neural Networks
Python
391
star
7

ULTRA

A foundation model for knowledge graph reasoning
Python
333
star
8

GearNet

GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
Python
242
star
9

NBFNet

Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)
Python
191
star
10

ConfGF

Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).
Python
145
star
11

pLogicNet

Python
143
star
12

AStarNet

Official implementation of A* Networks
Python
121
star
13

RNNLogic

C++
118
star
14

GNN-QE

Official implementation of Graph Neural Network Query Executor (ICML 2022)
Python
86
star
15

PEER_Benchmark

PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
Python
74
star
16

GraphLoG

Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).
Python
68
star
17

DiffPack

Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
Python
63
star
18

ProtST

[ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
Python
62
star
19

GraphAF

49
star
20

ESM-GearNet

ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
Python
48
star
21

InductiveQE

Official implementation of Inductive Logical Query Answering in Knowledge Graphs (NeurIPS 2022)
Python
48
star
22

ContinuousGNN

Python
42
star
23

FewShotRE

Python
38
star
24

SiamDiff

Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
Python
31
star
25

SPN

Python
28
star
26

esm-s

Structure-Informed Protein Language Model
Python
22
star
27

DrugTutorial_AAAI2021

Tutorial for Drug Discovery on AAAI 2021.
CSS
8
star
28

DeepGraphLearning

Homepage
7
star
29

torchdrug-site

Website for TorchDrug
SCSS
6
star
30

GraphRepresentationLiterature

The literature on graph representation learning
4
star
31

ultra_torchdrug

A TorchDrug version of ULTRA for reproducibility
Python
4
star
32

AAAI19Tutorial

Tutorial "graph representation learning" given at AAAI'19
3
star
33

torchprotein-site

Website for TorchProtein
SCSS
3
star
34

coursewebsite

Course website for Deep Learning and Applications
CSS
2
star
35

Math80600A_2021W

Python
1
star