MilaGraph (@DeepGraphLearning)
Guthub

DeepGraphLearning

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  • Stars
    star
    10,268
  • Global Org. Rank 2,315 (Top 0.8 %)
  • Registered over 6 years ago
  • Most used languages
    Python
         81.3 %
    C++
         6.3 %
    CSS
         6.3 %
    SCSS     6.3 %
  • Location πŸ‡¨πŸ‡¦ Canada
  • Country Total Rank 94
  • Country Ranking
    Python
         23
    C++
         28
    SCSS     65
    CSS
         526

Top repositories

1

LiteratureDL4Graph

A comprehensive collection of recent papers on graph deep learning
3,068
star
2

torchdrug

A powerful and flexible machine learning platform for drug discovery
Python
1,382
star
3

graphvite

GraphVite: A General and High-performance Graph Embedding System
C++
1,207
star
4

KnowledgeGraphEmbedding

Python
1,184
star
5

RecommenderSystems

Python
1,058
star
6

ULTRA

A foundation model for knowledge graph reasoning
Python
420
star
7

GMNN

Graph Markov Neural Networks
Python
400
star
8

GearNet

GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
Python
265
star
9

NBFNet

Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)
Python
196
star
10

ConfGF

Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).
Python
159
star
11

pLogicNet

Python
143
star
12

RNNLogic

C++
123
star
13

AStarNet

Official implementation of A* Networks
Python
121
star
14

GraphAny

GraphAny: A foundation model for node classification on any graph.
Python
101
star
15

GNN-QE

Official implementation of Graph Neural Network Query Executor (ICML 2022)
Python
89
star
16

PEER_Benchmark

PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
Python
79
star
17

ESM-GearNet

ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
Python
75
star
18

DiffPack

Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
Python
71
star
19

GraphLoG

Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).
Python
68
star
20

ProtST

[ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
Python
62
star
21

GraphAF

50
star
22

InductiveQE

Official implementation of Inductive Logical Query Answering in Knowledge Graphs (NeurIPS 2022)
Python
47
star
23

ContinuousGNN

Python
44
star
24

FewShotRE

Python
38
star
25

SiamDiff

Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
Python
38
star
26

SPN

Python
29
star
27

GearBind

Pretrainable geometric graph neural network for antibody affinity maturation
Python
28
star
28

esm-s

Structure-Informed Protein Language Model
Python
26
star
29

DrugTutorial_AAAI2021

Tutorial for Drug Discovery on AAAI 2021.
CSS
8
star
30

DeepGraphLearning

Homepage
7
star
31

torchdrug-site

Website for TorchDrug
SCSS
6
star
32

GraphRepresentationLiterature

The literature on graph representation learning
4
star
33

ultra_torchdrug

A TorchDrug version of ULTRA for reproducibility
Python
4
star
34

AAAI19Tutorial

Tutorial "graph representation learning" given at AAAI'19
3
star
35

torchprotein-site

Website for TorchProtein
SCSS
3
star
36

coursewebsite

Course website for Deep Learning and Applications
CSS
2
star
37

Math80600A_2021W

Python
1
star