DeepGraphLearning/ProtST

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Language
Python
License
Apache License 2.0
Created over 1 year ago
Updated about 1 year ago

DeepGraphLearning/ProtST

DeepGraphLearning

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[ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts

LiteratureDL4Graph

A comprehensive collection of recent papers on graph deep learning

torchdrug

A powerful and flexible machine learning platform for drug discovery

graphvite

GraphVite: A General and High-performance Graph Embedding System

KnowledgeGraphEmbedding

RecommenderSystems

ULTRA

A foundation model for knowledge graph reasoning

GMNN

Graph Markov Neural Networks

GearNet

GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

NBFNet

Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

ConfGF

Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

pLogicNet

RNNLogic

AStarNet

Official implementation of A* Networks

GraphAny

GraphAny: A foundation model for node classification on any graph.

GNN-QE

Official implementation of Graph Neural Network Query Executor (ICML 2022)

PEER_Benchmark

PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)

ESM-GearNet

ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)

DiffPack

Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing

GraphLoG

Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).

GraphAF

InductiveQE

Official implementation of Inductive Logical Query Answering in Knowledge Graphs (NeurIPS 2022)

ContinuousGNN

FewShotRE

SiamDiff

Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)

SPN

GearBind

Pretrainable geometric graph neural network for antibody affinity maturation

esm-s

Structure-Informed Protein Language Model

DrugTutorial_AAAI2021

Tutorial for Drug Discovery on AAAI 2021.

DeepGraphLearning

torchdrug-site

Website for TorchDrug

GraphRepresentationLiterature

The literature on graph representation learning

ultra_torchdrug

A TorchDrug version of ULTRA for reproducibility

AAAI19Tutorial

Tutorial "graph representation learning" given at AAAI'19

torchprotein-site

Website for TorchProtein

coursewebsite

Course website for Deep Learning and Applications

Math80600A_2021W