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LiteratureDL4Graph
A comprehensive collection of recent papers on graph deep learningtorchdrug
A powerful and flexible machine learning platform for drug discoverygraphvite
GraphVite: A General and High-performance Graph Embedding SystemKnowledgeGraphEmbedding
RecommenderSystems
ULTRA
A foundation model for knowledge graph reasoningGMNN
Graph Markov Neural NetworksGearNet
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)NBFNet
Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)ConfGF
Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).pLogicNet
RNNLogic
AStarNet
Official implementation of A* NetworksGraphAny
GraphAny: A foundation model for node classification on any graph.GNN-QE
Official implementation of Graph Neural Network Query Executor (ICML 2022)PEER_Benchmark
PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)ESM-GearNet
ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)DiffPack
Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain PackingGraphLoG
Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).ProtST
[ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical TextsGraphAF
InductiveQE
Official implementation of Inductive Logical Query Answering in Knowledge Graphs (NeurIPS 2022)ContinuousGNN
FewShotRE
SPN
GearBind
Pretrainable geometric graph neural network for antibody affinity maturationesm-s
Structure-Informed Protein Language ModelDrugTutorial_AAAI2021
Tutorial for Drug Discovery on AAAI 2021.DeepGraphLearning
Homepagetorchdrug-site
Website for TorchDrugGraphRepresentationLiterature
The literature on graph representation learningultra_torchdrug
A TorchDrug version of ULTRA for reproducibilityAAAI19Tutorial
Tutorial "graph representation learning" given at AAAI'19torchprotein-site
Website for TorchProteincoursewebsite
Course website for Deep Learning and ApplicationsMath80600A_2021W
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