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LiteratureDL4Graph
A comprehensive collection of recent papers on graph deep learningtorchdrug
A powerful and flexible machine learning platform for drug discoverygraphvite
GraphVite: A General and High-performance Graph Embedding SystemKnowledgeGraphEmbedding
RecommenderSystems
ULTRA
A foundation model for knowledge graph reasoningGMNN
Graph Markov Neural NetworksGearNet
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)NBFNet
Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)ConfGF
Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).pLogicNet
RNNLogic
AStarNet
Official implementation of A* NetworksGraphAny
GraphAny: A foundation model for node classification on any graph.GNN-QE
Official implementation of Graph Neural Network Query Executor (ICML 2022)PEER_Benchmark
PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)ESM-GearNet
ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)DiffPack
Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain PackingGraphLoG
Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).ProtST
[ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical TextsGraphAF
InductiveQE
Official implementation of Inductive Logical Query Answering in Knowledge Graphs (NeurIPS 2022)ContinuousGNN
FewShotRE
SiamDiff
Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)SPN
GearBind
Pretrainable geometric graph neural network for antibody affinity maturationesm-s
Structure-Informed Protein Language ModelDrugTutorial_AAAI2021
Tutorial for Drug Discovery on AAAI 2021.DeepGraphLearning
Homepagetorchdrug-site
Website for TorchDrugGraphRepresentationLiterature
The literature on graph representation learningAAAI19Tutorial
Tutorial "graph representation learning" given at AAAI'19torchprotein-site
Website for TorchProteincoursewebsite
Course website for Deep Learning and ApplicationsMath80600A_2021W
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