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depthcharge
A deep learning toolkit for mass spectrometrymokapot
Fast and flexible semi-supervised learning for peptide detection in Pythonppx
A Python interface to proteomics data repositoriesmzsniffer
Detect polymer contaminants in mass spectra.asms-ml-short-course
Links and meterials for the ASMS machine learning short course.pydeck
Easy remark slide decks using Python and markdown.xenith
Enhanced cross-linked peptide detection using pretrained models.msstats-demo
A demonstration of using MSstats in Python2023_asms-depthcharge
Notebooks to accompany my ASMS poster on Depthchargeperc2ssl
Convert crux percolator results to .ssl format for Bibliospectargetdecoy
A Python package for proteomics confidence estimation using target decoy competitionslides
My public slide deckscookiecutter-python-package
A template for new Python packages2024_depthcharge-demos
Demos to accompany our depthcharge manuscriptdotfiles
Repository for my dotfiles.mappingPeptides
Calculating all possible masses of peptide fragments.hugo-marmot
A minimalist, monospace Hugo theme.snakemake-beer-proteomics
A Snakemake tutorial workflow using the recent ABRF beer proteomics study..emacs.d
My emacs configurationtest
testing things.spacemacs.d
My spacemacs configurationec2-dotfiles
My dotfiles for Amazon EC2 instancesLRP1_Homology
Using R and the biomaRt package to retrieve homology information about LRP1SDAP-MS
inspired
Effortlessly inject inspirational messages into your Python codewispy
A python package for my utility functionscv
The source for my CV and BiosketchESKAPE_Glycolipid_MS
An analysis comparing lipid A mass spectra between different microbial speciesDetectingColistinResistance
Code for "Pathogen Identification Direct from Polymicrobial Specimens Using Membrane Glycolipids"comet-mokapot-flashflq_example
An example of using Comet + Mokapot + FlashLFQ to analyze DDA proteomics data.actions_tests
Playing around with github actionspersonal-website
My personal websiteparser_speed_test
A speed test for Alan.latex
A repository for my custom LaTeX classesLove Open Source and this site? Check out how you can help us