Discover @wfondrie Open Source projects

Will Fondrie (@wfondrie)

wfondrie

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Global Rank 111,538 (Top 4 %)
Followers 62
Following 16
Registered about 10 years ago
Most used languages

Python
38.7 %

Jupyter Notebook
19.4 %

R
16.1 %

Emacs Lisp
9.7 %

Rust
3.2 %

Shell
3.2 %

CSS
3.2 %

JavaScript
3.2 %

TeX
3.2 %
Location 🇺🇸 United States
Country Total Rank 39,083
Country Ranking

Emacs Lisp
1,151

R
3,950

Rust
4,024

TeX
6,208

Jupyter Notebook
6,411

Python
6,558

depthcharge

A deep learning toolkit for mass spectrometry

mokapot

Fast and flexible semi-supervised learning for peptide detection in Python

ppx

A Python interface to proteomics data repositories

mzsniffer

Detect polymer contaminants in mass spectra.

asms-ml-short-course

Links and meterials for the ASMS machine learning short course.

Jupyter Notebook

pydeck

Easy remark slide decks using Python and markdown.

xenith

Enhanced cross-linked peptide detection using pretrained models.

msstats-demo

A demonstration of using MSstats in Python

Jupyter Notebook

2023_asms-depthcharge

Notebooks to accompany my ASMS poster on Depthcharge

Jupyter Notebook

perc2ssl

Convert crux percolator results to .ssl format for Bibliospec

targetdecoy

A Python package for proteomics confidence estimation using target decoy competition

slides

My public slide decks

Jupyter Notebook

cookiecutter-python-package

A template for new Python packages

2024_depthcharge-demos

Demos to accompany our depthcharge manuscript

Jupyter Notebook

dotfiles

Repository for my dotfiles.

mappingPeptides

Calculating all possible masses of peptide fragments.

hugo-marmot

A minimalist, monospace Hugo theme.

snakemake-beer-proteomics

A Snakemake tutorial workflow using the recent ABRF beer proteomics study.

.emacs.d

My emacs configuration

test

.spacemacs.d

My spacemacs configuration

ec2-dotfiles

My dotfiles for Amazon EC2 instances

LRP1_Homology

Using R and the biomaRt package to retrieve homology information about LRP1

SDAP-MS

inspired

Effortlessly inject inspirational messages into your Python code

xenith_trainer

Manage the training data and the pretrained models included in xenith

wispy

A python package for my utility functions

cv

The source for my CV and Biosketch

ESKAPE_Glycolipid_MS

An analysis comparing lipid A mass spectra between different microbial species

DetectingColistinResistance

Code for "Pathogen Identification Direct from Polymicrobial Specimens Using Membrane Glycolipids"

comet-mokapot-flashflq_example

An example of using Comet + Mokapot + FlashLFQ to analyze DDA proteomics data.

actions_tests

Playing around with github actions

personal-website

My personal website

parser_speed_test

A speed test for Alan.

Jupyter Notebook

latex

A repository for my custom LaTeX classes