• Stars
    star
    3
  • Rank 3,944,322 (Top 79 %)
  • Language
    Python
  • License
    MIT License
  • Created almost 6 years ago
  • Updated over 5 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Easy remark slide decks using Python and markdown.

More Repositories

1

depthcharge

A deep learning toolkit for mass spectrometry
Python
59
star
2

mokapot

Fast and flexible semi-supervised learning for peptide detection in Python
Python
40
star
3

ppx

A Python interface to proteomics data repositories
Python
28
star
4

mzsniffer

Detect polymer contaminants in mass spectra.
Rust
8
star
5

asms-ml-short-course

Links and meterials for the ASMS machine learning short course.
Jupyter Notebook
6
star
6

xenith

Enhanced cross-linked peptide detection using pretrained models.
Python
3
star
7

msstats-demo

A demonstration of using MSstats in Python
Jupyter Notebook
3
star
8

2023_asms-depthcharge

Notebooks to accompany my ASMS poster on Depthcharge
Jupyter Notebook
3
star
9

perc2ssl

Convert crux percolator results to .ssl format for Bibliospec
Python
2
star
10

targetdecoy

A Python package for proteomics confidence estimation using target decoy competition
Python
2
star
11

slides

My public slide decks
Jupyter Notebook
2
star
12

cookiecutter-python-package

A template for new Python packages
Python
2
star
13

2024_depthcharge-demos

Demos to accompany our depthcharge manuscript
Jupyter Notebook
1
star
14

dotfiles

Repository for my dotfiles.
Emacs Lisp
1
star
15

mappingPeptides

Calculating all possible masses of peptide fragments.
R
1
star
16

hugo-marmot

A minimalist, monospace Hugo theme.
CSS
1
star
17

snakemake-beer-proteomics

A Snakemake tutorial workflow using the recent ABRF beer proteomics study.
Python
1
star
18

.emacs.d

My emacs configuration
Emacs Lisp
1
star
19

test

testing things
1
star
20

.spacemacs.d

My spacemacs configuration
Emacs Lisp
1
star
21

ec2-dotfiles

My dotfiles for Amazon EC2 instances
Shell
1
star
22

LRP1_Homology

Using R and the biomaRt package to retrieve homology information about LRP1
R
1
star
23

SDAP-MS

R
1
star
24

inspired

Effortlessly inject inspirational messages into your Python code
Python
1
star
25

xenith_trainer

Manage the training data and the pretrained models included in xenith
Python
1
star
26

wispy

A python package for my utility functions
Python
1
star
27

cv

The source for my CV and Biosketch
TeX
1
star
28

ESKAPE_Glycolipid_MS

An analysis comparing lipid A mass spectra between different microbial species
R
1
star
29

DetectingColistinResistance

Code for "Pathogen Identification Direct from Polymicrobial Specimens Using Membrane Glycolipids"
R
1
star
30

comet-mokapot-flashflq_example

An example of using Comet + Mokapot + FlashLFQ to analyze DDA proteomics data.
1
star
31

actions_tests

Playing around with github actions
1
star
32

personal-website

My personal website
JavaScript
1
star
33

parser_speed_test

A speed test for Alan.
Jupyter Notebook
1
star
34

latex

A repository for my custom LaTeX classes
1
star