• Stars
    star
    10,697
  • Rank 3,202 (Top 0.07 %)
  • Language
    Python
  • License
    Other
  • Created over 5 years ago
  • Updated 10 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

An open access book on scientific visualization using python and matplotlib

Scientific Visualization: Python + Matplotlib

Nicolas P. Rougier, Bordeaux, November 2021.

Front cover

The Python scientific visualisation landscape is huge. It is composed of a myriad of tools, ranging from the most versatile and widely used down to the more specialised and confidential. Some of these tools are community based while others are developed by companies. Some are made specifically for the web, others are for the desktop only, some deal with 3D and large data, while others target flawless 2D rendering. In this landscape, Matplotlib has a very special place. It is a versatile and powerful library that allows you to design very high quality figures, suitable for scientific publishing. It also offers a simple and intuitive interface as well as an object oriented architecture that allows you to tweak anything within a figure. Finally, it can be used as a regular graphic library in order to design non‐scientific figures. This book is organized into four parts. The first part considers the fundamental principles of the Matplotlib library. This includes reviewing the different parts that constitute a figure, the different coordinate systems, the available scales and projections, and we’ll also introduce a few concepts related to typography and colors. The second part is dedicated to the actual design of a figure. After introducing some simple rules for generating better figures, we’ll then go on to explain the Matplotlib defaults and styling system before diving on into figure layout organization. We’ll then explore the different types of plot available and see how a figure can be ornamented with different elements. The third part is dedicated to more advanced concepts, namely 3D figures, optimization & animation. The fourth and final part is a collection of showcases.

Read the book

You can read the book PDF (95Mo, preferred site) that is open access and hosted on HAL which is a French open archive for academics. Up to date version is also available on GitHub here. Sources for the book (including code examples) are available at github.com/rougier/scientific-visualization-book.

Buy the book

If you want to buy the book, you can order a printed edition at amazon.com for 49$. If you want to support or sponsor my future work on Python (and Emacs), you can use paypal, github or liberapay.

If you don't want to spend money, you can simply nominate me for the GitHub stars program if you find my work useful for the community.

Build the book

Ubuntu

See also

Book gallery

More Repositories

1

numpy-100

100 numpy exercises (with solutions)
Python
10,706
star
2

matplotlib-cheatsheet

Matplotlib 3.1 cheat sheet.
Python
2,898
star
3

matplotlib-tutorial

Matplotlib tutorial for beginner
Python
2,776
star
4

nano-emacs

GNU Emacs / N Λ N O - Emacs made simple
Emacs Lisp
2,564
star
5

from-python-to-numpy

An open-access book on numpy vectorization techniques, Nicolas P. Rougier, 2017
Python
1,904
star
6

freetype-gl

OpenGL text using one vertex buffer, one texture and FreeType
C
1,641
star
7

elegant-emacs

A very minimal but elegant emacs (I think)
Emacs Lisp
1,368
star
8

CPP-Crash-Course

C++ Crash Course
C++
716
star
9

ML-Recipes

A collection of stand-alone Python machine learning recipes
Python
657
star
10

notebook-mode

GNU Emacs notebook mode
Emacs Lisp
617
star
11

python-opengl

An open access book on Python, OpenGL and Scientific Visualization, Nicolas P. Rougier, 2018
HTML
575
star
12

svg-tag-mode

A minor mode for Emacs that replace keywords with nice SVG labels
Emacs Lisp
496
star
13

mu4e-dashboard

A dashboard for mu4e (mu for emacs)
Emacs Lisp
465
star
14

numpy-tutorial

Numpy beginner tutorial
Python
459
star
15

emacs-gtd

Get Things Done with Emacs
CSS
441
star
16

nano-theme

GNU Emacs / N Λ N O Theme
Emacs Lisp
374
star
17

svg-lib

Emacs SVG libraries for creatings tags, icons and bars
Emacs Lisp
340
star
18

book-mode

A clean interface for org files (Emacs)
Emacs Lisp
290
star
19

ten-rules

Ten simple rules for better figures
Python
274
star
20

freetype-py

Python binding for the freetype library
Python
270
star
21

matplotlib-3d

Experimental 3D axis for matplotlib
Python
269
star
22

dotemacs

Litterate configuration for GNU Emacs
216
star
23

nano-modeline

GNU Emacs / N Λ N O Modeline
Emacs Lisp
175
star
24

tiny-renderer

A tiny sotfware 3D renderer in 100 lines of Python
Python
171
star
25

org-bib-mode

An Emacs minor mode for literate & annotated bibliography
Emacs Lisp
136
star
26

mu4e-thread-folding

Functions for folding threads in mu4e headers view
Emacs Lisp
136
star
27

agenda

Org agenda in the console
Python
134
star
28

neural-networks

Artificial Neural Networks / Python
Python
134
star
29

nano-sidebar

Emacs package to have configurable sidebars on a per frame basis.
Emacs Lisp
128
star
30

notes-list

Emacs notes list
Emacs Lisp
102
star
31

scipy-crash-course

Material for a 24 hours course on Scientific Python
102
star
32

python-visualization-landscape

Adaptation of Jake VanderPlas graphic about python visualization landscape
HTML
97
star
33

org-margin

Outdent headlines in emacs org-mode
Emacs Lisp
96
star
34

calendar-heatmap

Calendar heatmap with matplotlib and random data
Python
95
star
35

emacs-svg-icon

An emacs library to create SVG icons on the fly
Emacs Lisp
94
star
36

sideframe

Emacs side frames
Emacs Lisp
88
star
37

nano-dialog

Emac native dialog box
Emacs Lisp
87
star
38

nano-agenda

A minimal org agenda for Emacs
Emacs Lisp
84
star
39

gl-agg

OpenGL Antigrain Geometry experiments
Python
83
star
40

nano-elfeed

Emacs configuration file for elfeed (news reader)
Emacs Lisp
68
star
41

emacs-splash

An alternative splash screen for GNU Emacs
Emacs Lisp
63
star
42

recursive-voronoi

Recursive voronoi diagram
Python
60
star
43

2021-Dataviz

Material for dataviz course at university of Bordeaux
Jupyter Notebook
51
star
44

CNCC-2020

Computational Neuroscience Crash Course (University of Bordeaux, 2020)
Jupyter Notebook
48
star
45

gallery

Gallery of matplotlib samples
Python
47
star
46

50-git-questions

50 Frequently Asked question about Git & GitHub
47
star
47

mastodon-alt

Emacs alternative mastodon layout
Emacs Lisp
46
star
48

baby-gnu-tux

3D files for printing baby GNU and Tux
46
star
49

windmap

Streamlines animation (matplotlib)
Python
46
star
50

URFIST-git-course

This is the material for the URFIST course on Git & GitHub. Bordeaux, March 27 & 28, 2018.
44
star
51

rougier

Exended profile
43
star
52

nano-vertico

Emacs / nano + vertico
Emacs Lisp
43
star
53

minibuffer-header

Minibuffer header for GNU/Emacs
Emacs Lisp
43
star
54

open-heroes

Some people that facilitate science, one way or the other
41
star
55

alien-life

Remake of necessary disorrder beautiful animation
Python
41
star
56

reviewer-manifesto

A pledge for reviewers
40
star
57

pyglfw

Python bindings for GLFW 3.0
Python
40
star
58

pdf-drop-mode

Get DOI from PDF files dropped onto a Emacs buffer
Emacs Lisp
35
star
59

persid

Persistent identifier library for GNU Emacs
Emacs Lisp
35
star
60

scientific-posters

A collection of scientific posters (with sources) made with Pages or ComicLife
Rich Text Format
34
star
61

nano-toolbar

Emacs toolbar in the header line
Emacs Lisp
33
star
62

org-imenu

org-mode side menu with filtering capability
Emacs Lisp
31
star
63

org-outer-indent

An outer indentation org mode
Emacs Lisp
30
star
64

Neurosciences

Computational Neurosciences repository
Python
30
star
65

nano-calendar

An alternative calendar for Emacs
Emacs Lisp
28
star
66

relative-date

Emacs package for formatting relative dates (dates difference)
Emacs Lisp
28
star
67

CNCC-2019

Computational Neuroscience Crash Course (CNCC 2019)
Jupyter Notebook
27
star
68

unknown-pleasures

Matplotlib animation from the Unknown Pleasures album cover (Joy Division)
Python
26
star
69

2023-dataviz-nancy

Material for dataviz course (Nancy, 2023)
Jupyter Notebook
25
star
70

conference-posters

A collection of conferences posters (with sources) made with Pages
25
star
71

aerial-emacs

A cleaner and less cluttered style for emacs
Emacs Lisp
25
star
72

2024-Dataviz

Material for the dataviz courses, Bordeaux
Jupyter Notebook
25
star
73

VSOM

Randomize Self Organizing map
Python
24
star
74

emacs-octicons

Octicons glyph name for emacs
Emacs Lisp
22
star
75

dynamic-som

Dynamic Self-Organized maps
Python
22
star
76

numpy-glm

GL Mathematics for Numpy
Python
21
star
77

Scipy-Bordeaux-2018

Notes for the Scientific Python course at the university of Bordeaux
21
star
78

Scipy-Bordeaux-2016

Course taught at the University of Bordeaux in the academic year 2015/16 for PhD students.
21
star
79

bootstrap-rst

Restructured Text Bootstrap
Python
19
star
80

nano-bell

Visual bell for GNU Emacs
Emacs Lisp
19
star
81

pendulum

Animated double pendulum using matplotlib
Python
18
star
82

spatial-computation

Spatial computation
Python
18
star
83

nano-splash

N Λ N O Splash
Emacs Lisp
16
star
84

Scipy-Bordeaux-2017

Course taught at the University of Bordeaux in the academic year 2017 for PhD students.
16
star
85

less-is-more

A remake of the animation by Dark Horse Analytics (http://www.darkhorseanalytics.com)
Python
16
star
86

nano-minibuffer

Minibuffer for NΛNO Emacs
Emacs Lisp
15
star
87

org-agenda-conflict

Mark conflicting items in the org-agenda
Emacs Lisp
15
star
88

emacs-defaults

Defaults setting for vanilla emacs
Emacs Lisp
15
star
89

blog

My GitHub blog
14
star
90

ASPP-2017

Material for the Advanced Scientific Python Programming course, Nikiti, Greece, 2017
Python
14
star
91

nano-command

Emacs / Quick command in the mode-line or header-line
Emacs Lisp
13
star
92

figure-anatomy

Anatomy of a matplotlib figure
Python
13
star
93

Scipy-Bordeaux-2019

Lecture notes (Université de Bordeaux)
Python
13
star
94

gl-bezier

Experiments on quadratic and cubic Bézier curves
Python
12
star
95

mu4e-folding

Thread folding support for mu4e
Emacs Lisp
12
star
96

galaxy

Spiral galaxy simulator using the density wave theory
Python
12
star
97

EmacsConf-2022

Poster for the Emacs conference 2022
12
star
98

mu4e-thread

mu4e thread folding
Emacs Lisp
11
star
99

dana

Distributed (Asynchronous) Numerical Adaptive computing framework
Python
11
star
100

nano-read

Alternartive read functions for GNU Emacs
Emacs Lisp
11
star