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savgol
Implements Savitzky-Golay filters in ruby (and eventually in NMatrix)mspire
mass spectrometry proteomics in rubyrubabel
Ruby interface to the OpenBabel ruby bindings similar to pybelgene_ontology
simple class for working with GO (gene ontology); also see Bio::GO classes in biorubymspire-simulator
Options Builderlipid_classifier
Lipid classification toolkatamari
mass spectrometry proteomics analysis pipeline based on KatamariDoteimspire-sequest
An mspire library for working with SEQUEST related data (.srf files, .sqt files, etc).KDER
A KDE implementation in rubymetriculator
Performance metric tool for LCMS and MS experiments.xcalibur-sld
Reads Thermo SLD (sequence) files that contain the information about the sequence of mass spectrometry runs.Ruby-KDE
Code required for ruby implementation of KDE and some stats (t-tests)msplinter
fragments moleculesemass
A copy of Perttu Haimi's implementation of the Rockwood & Haimi 2006 JASMS "Efficient Calculation of Accurate Masses of Isotopic Peaks" method. Includes some fixes which are tracked via version control.gnuplot-multiplot
enhances the gnuplot gem with multiplot capabilityGuiMsConverter
This is a Ruby/Shoes based GUI for enabling those who dislike CLI programs to easily convert their RAW files to formats conducive to downstream processing.pocketbook
Mass Spec Proteomics database and search engine.specdive
Data viewing interface for KatamariDotei in RailsKatamariDotei
An MS proteomic analysis pipeline developed under Prince Labs (Still in development)ms-quant-validator-misc
For validating various ms quantitation engines (fairly custom)mspire-centroider
centroid profile spectraspectral_summing
isoelectric_calc
Calculates pI values for given protein sequencesms-archiver
A package to archive and analyze MS data over both Windows and Linux machines and archive all the files to both a database and a network location.mspire-lipid
for working with mass spectrometry lipidomics data (right now shotgun style data)ms-testdata
Stores larger data files for commonly used file formatsms-quant
quantitation for mass spectrometry proteomics experiments. This project is not associated with MSQuant(http://msquant.sourceforge.net/), even though the goals are similar.ms-ident
mspire library for dealing with identifications from mass spectrometryprotein_tag_annotater
This produces an annotated markdown file for visualizing the changes caused by tagging agent.double_disulfide_searcher
ms-qspecprep
This is a package that can prep files completely for a statistical comparison by the QSpec packageLove Open Source and this site? Check out how you can help us