princelab/xcalibur-sld princelab/xcalibur-sld

  • Stars
    star
    3
  • Rank 3,963,521 (Top 79 %)
  • Language
    Ruby
  • License
    Other
  • Created over 11 years ago
  • Updated over 11 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
princelab/xcalibur-sld
github

princelab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Reads Thermo SLD (sequence) files that contain the information about the sequence of mass spectrometry runs.

More Repositories

1

savgol

Implements Savitzky-Golay filters in ruby (and eventually in NMatrix)
Ruby
11
star
2

mspire

mass spectrometry proteomics in ruby
Ruby
11
star
3

rubabel

Ruby interface to the OpenBabel ruby bindings similar to pybel
Ruby
9
star
4

gene_ontology

simple class for working with GO (gene ontology); also see Bio::GO classes in bioruby
Ruby
6
star
5

mspire-simulator

Options Builder
Ruby
6
star
6

lipid_classifier

Lipid classification tool
Ruby
5
star
7

katamari

mass spectrometry proteomics analysis pipeline based on KatamariDotei
Ruby
5
star
8

mspire-sequest

An mspire library for working with SEQUEST related data (.srf files, .sqt files, etc).
Ruby
4
star
9

KDER

A KDE implementation in ruby
Ruby
4
star
10

metriculator

Performance metric tool for LCMS and MS experiments.
Ruby
3
star
11

Ruby-KDE

Code required for ruby implementation of KDE and some stats (t-tests)
JavaScript
2
star
12

msplinter

fragments molecules
Ruby
2
star
13

emass

A copy of Perttu Haimi's implementation of the Rockwood & Haimi 2006 JASMS "Efficient Calculation of Accurate Masses of Isotopic Peaks" method. Includes some fixes which are tracked via version control.
C++
2
star
14

gnuplot-multiplot

enhances the gnuplot gem with multiplot capability
Ruby
2
star
15

GuiMsConverter

This is a Ruby/Shoes based GUI for enabling those who dislike CLI programs to easily convert their RAW files to formats conducive to downstream processing.
Ruby
1
star
16

pocketbook

Mass Spec Proteomics database and search engine.
Ruby
1
star
17

pchip

Piecewise Cubic Hermite spline interpolation methods for ruby
Ruby
1
star
18

specdive

Data viewing interface for KatamariDotei in Rails
Ruby
1
star
19

KatamariDotei

An MS proteomic analysis pipeline developed under Prince Labs (Still in development)
Ruby
1
star
20

ms-quant-validator-misc

For validating various ms quantitation engines (fairly custom)
Ruby
1
star
21

mspire-centroider

centroid profile spectra
Ruby
1
star
22

spectral_summing

Ruby
1
star
23

isoelectric_calc

Calculates pI values for given protein sequences
Ruby
1
star
24

ms-archiver

A package to archive and analyze MS data over both Windows and Linux machines and archive all the files to both a database and a network location.
Ruby
1
star
25

mspire-lipid

for working with mass spectrometry lipidomics data (right now shotgun style data)
Ruby
1
star
26

ms-testdata

Stores larger data files for commonly used file formats
Ruby
1
star
27

ms-quant

quantitation for mass spectrometry proteomics experiments. This project is not associated with MSQuant(http://msquant.sourceforge.net/), even though the goals are similar.
Ruby
1
star
28

ms-ident

mspire library for dealing with identifications from mass spectrometry
Ruby
1
star
29

protein_tag_annotater

This produces an annotated markdown file for visualizing the changes caused by tagging agent.
Ruby
1
star
30

double_disulfide_searcher

Ruby
1
star
31

ms-qspecprep

This is a package that can prep files completely for a statistical comparison by the QSpec package
Ruby
1
star