• Stars
    star
    2
  • Language
  • License
    Creative Commons ...
  • Created over 8 years ago
  • Updated over 6 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

The Vertebrate Taxonomy Ontology aims to provide one comprehensive hierarchy for both extinct and extant vertebrates

More Repositories

1

scowl

A Scala DSL for programming with the OWL API.
Scala
55
star
2

owlery

Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.
Scala
15
star
3

owlet

A little OWL in SPARQL.
Scala
13
star
4

Phenex

Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.
Java
10
star
5

phenoscape-nlp

Source for the CharaParser application, which uses natural language processing to propose EQ-based phenotype annotations.
Java
7
star
6

sparql-utils

Scala SPARQL utilities
Scala
5
star
7

rphenoscape

R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.
R
5
star
8

taxrank

Taxonomic rank ontology
Makefile
4
star
9

KB-DataFest-2017

Promoting Phenoscape KB Data Access and Interoperability Codefest, 2017
4
star
10

pheno-repo

Repository of OWL-based phenotypic descriptions
Makefile
4
star
11

scate-shortcourse

Package for the "Phylogenetic comparative analysis of integrated anatomical traits" short course
R
4
star
12

phenoscape-owl-tools

OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.
Scala
4
star
13

charaparser-unsupervised

Java implementation of the unsupervised bootstrapping algorithm used within the CharaParser application.
Java
3
star
14

TraitFest-2023

Main repository for information advertising and documenting the 2023 SCATE TraitFest
R
3
star
15

PhenoscapeWeb

Web application for exploring the OBD-based Phenoscape Knowledgebase.
JavaScript
3
star
16

pheno-jsonld

notes on an interoperable format for expressing phenotypic data for taxa
2
star
17

phenoscape-data

NeXML data files annotated by Phenoscape curators.
Java
2
star
18

vue2owl

Convert a VUE document to an OWL ontology.
Scala
2
star
19

phenoscape-kb-rdf-data

RDF/XML serialization of the Phenoscape RDF knowledgebase.
2
star
20

PhenoscapeOBD-WS

Phenoscape data services web application for the legacy OBD-based knowledgebase.
Java
2
star
21

phenoscaperb

Phenoscape Ruby gem
Ruby
2
star
22

PhenoscapeDataLoader

Data processing utilities for assembling the legacy OBD-based Phenoscape knowledgebase.
Java
2
star
23

teleost-taxonomy-ontology

An ontology covering the taxonomy of teleosts (bony fish). Now superseded by Vertebrate Taxonomy Ontology.
1
star
24

phenoscape-kb-services

Web services application for the Phenoscape RDF knowledgebase.
Scala
1
star
25

nexldrb

NeXML - JSON-LD converter
Ruby
1
star
26

phenoscape.github.com

Phenoscape website
JavaScript
1
star
27

synctool-oboedit

Synchronization tool for OBO-Edit. This plugin is being obsoleted by mappings provided by the Uberon project.
Java
1
star
28

EnviroPackets

exploration of using phenopackets to describe environments
Shell
1
star
29

blazegraph-docker

Docker image for running a Blazegraph server
Dockerfile
1
star
30

Phenotype-Matching-Queries

Queries on the OBD-based Phenoscape KB to suggest possible matching phenotypes and profiles (sets of phenotypes).
Java
1
star
31

pipeline-tools

Command-line environment needed to build Phenoscape Knowledgebase
Dockerfile
1
star